Showing : gwastools • reset
0
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5
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1.6k
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GWASTools assocTestCPH on cluster vs. computer
gwastools
updated 9.3 years ago by ▴ 870 • written 9.5 years ago by • 0
0
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3
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1.4k
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GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 10.9 years ago by ▴ 60 • written 11.0 years ago by ▴ 870
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2
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1.5k
views
Errors when attempting to run association tests in GWASTools
gwastools
9.6 years ago mrynerson • 0
0
votes
3
replies
2.5k
views
Affymetrix CEL files
cdf GWASTools cdf GWASTools
updated 11.0 years ago by 65k • written 11.0 years ago by ▴ 870
0
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2
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422
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 5 months ago by ▴ 870 • written 5 months ago by • 0
2
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4
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869
views
Question about GWASTools gdsSubset
GWASTools gdsSubset
written 15 months ago by • 0
0
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2
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1.5k
views
Question on 'gdsSubset' function
GWASTools
6.5 years ago yasuhito.nannya • 0
0
votes
2
replies
1.8k
views
Creating Intensity GDS file for the R package GWAStools
gwastools idat gds format
updated 6.8 years ago by ▴ 870 • written 6.8 years ago by • 0
1
vote
5
replies
1.8k
views
"set genotype" function for gds?
gwastools gds
7.3 years ago Lna • 0
0
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4
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1.9k
views
how to save subsetted GDS file
gwastools
written 6.0 years ago by ▴ 30
4
votes
2
replies
1.8k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
5.6 years ago • updated 5.3 years ago Stephanie M. Gogarten ▴ 870
3
votes
2
replies
1.8k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by ▴ 40
2
votes
1
reply
1.7k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools lrr baf NA
updated 8.5 years ago by ▴ 870 • written 8.5 years ago by ▴ 40
0
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1
reply
1.1k
views
Using custom expected R to estimate LRR with GWASTools
gwastools
updated 8.3 years ago by ▴ 870 • written 8.3 years ago by ▴ 40
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2
replies
1.3k
views
GWASTools: assocTestRegression, forcing the analysis to use reference allele
GWASTools GWASTools
updated 9.7 years ago by ▴ 870 • written 9.7 years ago by ★ 13k
0
votes
5
replies
1.8k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 10.9 years ago by ▴ 60 • written 10.9 years ago by ▴ 870
0
votes
2
replies
1.2k
views
GWASTools mendelList Constructor
GWASTools GWASTools
updated 11.7 years ago by ▴ 870 • written 11.7 years ago by ▴ 60
0
votes
1
reply
1.4k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 10.8 years ago by ▴ 870 • written 10.9 years ago by ▴ 60
0
votes
1
reply
2.2k
views
GWASTools
cdf GWASTools cdf GWASTools
10.8 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
2.5k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP VariantAnnotation Annotation probe VariantAnnotation GWASTools SNP VariantAnnotation
updated 9.9 years ago by ▴ 870 • written 9.9 years ago by ▴ 160
0
votes
1
reply
1.5k
views
GWASTools instalation problem
GWASTools GWASTools
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by ▴ 10
2
votes
1
reply
1.8k
views
PLINK features available in GWASTools?
gwastools
9.0 years ago Stephanie M. Gogarten ▴ 870
0
votes
2
replies
1.8k
views
Permutations of GWAS for GWASTools
gwastools
updated 8.7 years ago by ▴ 870 • written 8.7 years ago by • 0
0
votes
1
reply
1.1k
views
Joint test for interactions in GWASTools
gwastools
updated 8.7 years ago by ▴ 870 • written 8.7 years ago by • 0
2
votes
1
reply
1.1k
views
Error in importing signals with createAffyIntensityFile (GWASTools)
gwastools software error
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ▴ 40
2
votes
3
replies
1.6k
views
Importing affymetrix genotype calls with GWASTools
gwastools genotype affymetrix microarrays
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ▴ 40
1
vote
14
replies
3.7k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina
updated 8.0 years ago by ▴ 870 • written 8.0 years ago by • 0
0
votes
6
replies
2.2k
views
Error using readVcf
gwastools variantannotation
updated 6.9 years ago by ▴ 870 • written 6.9 years ago by • 0
1
vote
1
reply
809
views
Missing normalized x, normalized y, baf and logrrratio values
gwastools
updated 6.1 years ago by ▴ 870 • written 6.1 years ago by • 0
0
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1
reply
904
views
GWASTools vcfWrite function
gwastools
6.0 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
791
views
using GENESIS R package with non-human species
genesis gwastools
3.8 years ago Stephanie M. Gogarten ▴ 870
1
vote
4
replies
1.4k
views
Errors when trying to install 'gwscat' on ubuntu with R 4.0.3
GWASTools gwascat
updated 3.4 years ago by ★ 6.5k • written 3.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.4 years ago by • 0
0
votes
1
reply
1.5k
views
GWASTools for analyzing Canine_HD genotyping data
Organism cdf GWASTools Organism cdf GWASTools
11.2 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
881
views
GWATools use in creating ncdf files
cdf GWASTools cdf GWASTools
11.0 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
500
views
Human to mouse SNP conversion
liftOver SNP GWASTools
13 months ago bonheur • 0
0
votes
1
reply
1.3k
views
Error with FunciSNP
snp R gwastools
8.1 years ago • updated 8.0 years ago musomilan • 0
0
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0
replies
1.9k
views
GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.1 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.0k
views
GWASTools: Sandwich SE
GWASTools GWASTools
9.8 years ago Adrienne Stilp ▴ 30
0
votes
0
replies
1.0k
views
small GWASTools patch to allow to use already built gds objects in Genotype Readers
GWASTools GWASTools
10.1 years ago Karl Forner ▴ 70
0
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0
replies
1.2k
views
A question about GWASTools package
cdf GWASTools cdf GWASTools
11.1 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.2k
views
Fwd: GWASTools
cdf convert GWASTools cdf convert GWASTools
10.3 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
43 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
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Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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