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Bioconductor unable to update 'curl'
curl
HELP
5 months ago
kagodwi2
• 0
0
votes
2
replies
734
views
iam not able to do retrive data using GEOquery R package
HELP
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
ramya20kumar20
• 0
0
votes
9
replies
2.0k
views
'path' must be string
HELP
path
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
cpierce2
• 0
0
votes
1
reply
679
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.0 years ago by
DrFizz
• 0 • written 2.1 years ago by
melander
• 0
2
votes
6
replies
2.5k
views
Help me find the bug
DESeq2
HELP
2.5 years ago
Michael
• 0
0
votes
4
replies
2.5k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 2.5 years ago by
Basti
▴ 780 • written 2.5 years ago by
Michael
• 0
0
votes
2
replies
1.1k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
2.8 years ago
michela
▴ 20
3
votes
4
replies
1.7k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 2.8 years ago by
James W. MacDonald
68k • written 2.9 years ago by
michela
▴ 20
0
votes
10
replies
2.4k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
2.9 years ago
michela
▴ 20
0
votes
1
reply
958
views
Data visualization
HELP
Data
updated 3.0 years ago by
Guido Hooiveld
★ 4.1k • written 3.0 years ago by
mcclurejenniferc
• 0
2
votes
4
replies
3.0k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 2.5 years ago by
Rodrigo
▴ 10 • written 3.5 years ago by
Jessica
▴ 10
1
vote
2
replies
3.4k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
3.8 years ago
lexi.kellington
• 0
1
vote
9
replies
7.0k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 3.2 years ago by
Sanatan
• 0 • written 4.4 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
2.1k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
4.4 years ago
hgalmoore
• 0
0
votes
1
reply
2.5k
views
setup microbiome error
help
software error
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
mafusa20
• 0
0
votes
2
replies
1.4k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
rm1238
• 0
1
vote
4
replies
7.8k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 8.5 years ago by
Guangchuang Yu
★ 1.2k • written 8.5 years ago by
Mataivic
• 0
4
votes
5
replies
3.0k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 9.2 years ago by
Aaron Lun
★ 29k • written 9.2 years ago by
knipehf
• 0
0
votes
7
replies
2.6k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
9.2 years ago
fischer87
• 0
0
votes
2
replies
1.7k
views
help me to analysis my data
limma
help
updated 9.7 years ago by
svlachavas
▴ 840 • written 9.7 years ago by
libya.tahani
• 0
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Answer: How to analyze Affy data, CEL files not available
by
gptonline.ai.website
• 0
This is a really helpful thread. For anyone looking for more assistance with similar issues, I've found that using ChatGPT at [GPTOnline.ai…
Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Your question is a bit cryptic, Rich. Are you trying to rewrite the voomByGroup() function yourself, to incorporate functionality that the …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
Raya
• 0
Thank you for pointing this out James, it works now!
Answer: HMP_2019_t2d data origin
by
Levi Waldron
★ 1.1k
Dear @pleiramalls, @blann, sorry for the delay! We obtained fastq files for the HMP2 study from the HMP data portal (https://portal.hmpda…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★ 4.9k
I told you why, because you aggregate all cells into a single pseudobulk. You then need a pseudobulk per worm, but that assumes that in the…
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
Comment: Are voomByGroup and voomLmFit compatible?
Comment: Updated Support Site Editor
Updated Support Site Editor
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