Bioconductor Hic

Showing : hic • reset

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117

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HiC HiCDCPlus

written 13 days ago by Chaoability • 0

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567

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ChIPSeqData interact GenomicRanges HiC

16 months ago user_bioinfo • 0

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806

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JuicerTools HiC HiCDCPlus Java Juicer

written 2.1 years ago by IsMM • 0

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1.4k

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HiC Epigenetics HiCHIP ChIPSeq

3.5 years ago xubeisi • 0

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1.5k

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HOMER HiCUP BAM HiC

4.1 years ago Ankit ▴ 20

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1.3k

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 3.6 years ago by merve.sahn • 0 • written 5.1 years ago by mtS • 0

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938

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HiC hicrep HiCcompare

5.2 years ago changxu.fan ▴ 20

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2.4k

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diffHic GenomicInteractions edgeR HiC cooler

updated 5.3 years ago by Aaron Lun ★ 29k • written 5.3 years ago by Marco Blanchette ▴ 30

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1.4k

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diffHic HiC InteractionSet

updated 5.7 years ago by Aaron Lun ★ 29k • written 5.7 years ago by girardot • 0

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1.4k

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HiCompare HiC cool

updated 6.2 years ago by Kevin Blighe ★ 4.0k • written 6.2 years ago by c.chakraborty • 0

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2.1k

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hic

updated 6.9 years ago by bioparticles.melly • 0 • written 6.9 years ago by m.t.lorenc • 0

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2.4k

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diffhic gothic hicup hic-c hic

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by mictadlo ▴ 10

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1.3k

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hic diffhic gothic hicup hic-c

7.0 years ago mictadlo ▴ 10

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2.1k

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hic diffhic chromatin bedpe

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by gryderart • 0

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1.7k

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diffhic hic interactionset contactmatrix inflate

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by hwick1 ▴ 20

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2.4k

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diffhic hic

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by hwick1 ▴ 20

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1.9k

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diffhic hicpro hic

8.4 years ago sergio.espeso-gil • 0

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2.1k

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GOTHiC hic

10.3 years ago Nathan Sheffield ▴ 10

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3.6k

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HiTC gothic diffhic HiC

10.3 years ago Bogdan ▴ 670

19 results • Page 1 of 1

Recent ...

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Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0

I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…

Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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