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hic
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 8 weeks ago by
Chaoability
• 0
0
votes
0
replies
621
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
17 months ago
user_bioinfo
• 0
0
votes
2
replies
866
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 2.2 years ago by
IsMM
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
3.6 years ago
xubeisi
• 0
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
4.2 years ago
Ankit
▴ 20
0
votes
3
replies
1.4k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.8 years ago by
merve.sahn
• 0 • written 5.2 years ago by
mtS
• 0
0
votes
0
replies
985
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
5.3 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.5k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.4k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.8 years ago by
Aaron Lun
★ 29k • written 5.8 years ago by
girardot
• 0
0
votes
1
reply
1.4k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 6.3 years ago by
Kevin Blighe
★ 4.0k • written 6.3 years ago by
c.chakraborty
• 0
0
votes
3
replies
2.2k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 7.1 years ago by
bioparticles.melly
• 0 • written 7.1 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.4k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
7.2 years ago • updated 7.1 years ago
mictadlo
▴ 10
1
vote
1
reply
2.2k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.4 years ago by
Aaron Lun
★ 29k • written 7.4 years ago by
gryderart
• 0
2
votes
1
reply
1.8k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
hwick1
▴ 20
0
votes
8
replies
2.5k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
hwick1
▴ 20
2
votes
2
replies
2.1k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
8.5 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
2.1k
views
GOTHiC hg19 error
GOTHiC
hic
10.4 years ago
Nathan Sheffield
▴ 20
4
votes
20
replies
3.7k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.4 years ago
Bogdan
▴ 670
19 results • Page
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Answer: Limma-voom sample weights and impact on DEG numbers
by
fawadsaafir
• 0
<a href="https://deltaexecutoor.com/">delta apk</a> también conocido como Delta X, es una herramienta avanzada para ejecutar scripts perso…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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