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Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Benjamin
▴
20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot
by
Guido Hooiveld
★
4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Mike Smith
★
6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
Comment: Explannation for ROAST results
by
Jay
•
0
Yes! Tnx for your reply. I didn't notice the group design problem, so stupid. Thank you!
Answer: Explannation for ROAST results
by
ATpoint
★
4.8k
The `contrast = 2` in an intercept-less design test whether the expression in the 2nd group is not 0. You can easily solve this by using `~…
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