Showing : igraph • reset
2
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5
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1.4k
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Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 50
2
votes
4
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2.7k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 40
2
votes
2
replies
1.2k
views
taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.0 years ago by ▴ 470 • written 8.0 years ago by ▴ 40
1
vote
1
reply
1.5k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
6.7 years ago lljotall ▴ 10
0
votes
0
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961
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
7.9 years ago Abhishek Pratap ▴ 190
0
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0
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1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.3 years ago jan.soderman • 0
0
votes
2
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3.3k
views
get vertex xy coords from igraph mst plot
igraph
6.5 years ago Andrew Box ▴ 10
0
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0
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988
views
igraph PoTRA error
graph pathways igraph
6.1 years ago genomic8328 ▴ 10
0
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1
reply
904
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
0
votes
2
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1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
5.1 years ago Samuel Lee • 0
0
votes
1
reply
1.5k
views
igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 2.7 years ago by 50k • written 5.1 years ago by • 0
0
votes
2
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2.9k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
0
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0
replies
1.1k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
3.3 years ago Chantel • 0
0
votes
1
reply
621
views
GRanges list convert into igraph format
GRanges igraph
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 670
0
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4
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2.0k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 8.8 years ago by ▴ 20 • written 8.8 years ago by ▴ 130
0
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0
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528
views
coexpression networks
WGCNA igraph
17 months ago María José • 0
0
votes
1
reply
1.9k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 10
0
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2
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2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 6.9 years ago by • 0 • written 8.4 years ago by • 0
0
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0
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1.1k
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read tree fails for large trees
RamiGO R gene ontology igraph
8.2 years ago bkellman • 0
19 results • Page 1 of 1
Recent ...
Replies
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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