Showing : infrastructure • reset
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News: Single Package Builder / New Package Submission
new package build machines infrastructure News
5.6 years ago shepherl 4.2k
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deseq2 DESeqDataSet size when saved
deseq2 infrastructure deseqdataset importing
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
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News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
8.5 years ago nitesh.turaga ▴ 140
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The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
8.9 years ago gregory.wargula ▴ 30
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Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 9.3 years ago by • 0 • written 15.7 years ago by ★ 1.6k
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News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
9.4 years ago Matthew Ritchie ▴ 1000
3
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News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
10.5 years ago • updated 10.4 years ago Matthew Ritchie ▴ 1000
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5
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Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 680
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
12.0 years ago Holger Klein ▴ 20
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Bioinformatics Facility Director Position at UC Riverside
Proteomics Infrastructure Proteomics Infrastructure
12.2 years ago Thomas Girke ★ 1.7k
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1.4k
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Reopening of Computational Biologist position at Genentech
Infrastructure PROcess Infrastructure PROcess
12.4 years ago Michael Lawrence ★ 11k
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2
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*Ranges paper published
Infrastructure IRanges GenomicFeatures GenomicRanges Infrastructure IRanges GenomicFeatures
updated 12.4 years ago by ★ 4.2k • written 12.4 years ago by ★ 11k
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DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.4 years ago by ★ 1.9k • written 12.4 years ago by ▴ 40
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convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by 16k
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Finding mismatches between reads and reference sequence
Infrastructure Cancer BSgenome BSgenome Infrastructure Cancer BSgenome BSgenome
updated 12.7 years ago by ▴ 30 • written 12.7 years ago by 16k
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Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.7 years ago Matthew Thornton ▴ 390
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2
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3.0k
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 40
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Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure Infrastructure
12.7 years ago Jan T Kim ▴ 50
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3.2k
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.8 years ago Julie Zhu ★ 4.3k
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 80
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Open computational biologist position at Genentech
Infrastructure Infrastructure
12.9 years ago Michael Lawrence ★ 11k
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1.5k
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Bioinformatics Position Opening
Proteomics Infrastructure Proteomics Infrastructure
13.0 years ago Thomas Girke ★ 1.7k
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1.9k
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Bioinformatician Job at Pirbright Institute
Genetics Infrastructure Genetics Infrastructure
13.0 years ago Jan T Kim ▴ 50
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5
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1.5k
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pooling for parallel hierarchical operations
Infrastructure Infrastructure
updated 13.1 years ago by 25k • written 13.1 years ago by ★ 11k
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2
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counting RNA-seq reads in R/BioC
GO Infrastructure Rsubread easyRNASeq GO Infrastructure Rsubread easyRNASeq
updated 13.3 years ago by ★ 6.8k • written 13.3 years ago by ▴ 880
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good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 13.3 years ago by ★ 13k • written 13.4 years ago by 16k
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Bioinformatics Academic Coordinator Job Posting
Proteomics Infrastructure Proteomics Infrastructure
13.4 years ago Guest User ★ 13k
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2012 Bioconductor European Developers' Workshop - annoucement
Proteomics Infrastructure Proteomics Infrastructure
13.5 years ago Mark Robinson ▴ 880
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Open Position - Academic Coordinator for Bioinformatics
Proteomics Infrastructure Proteomics Infrastructure
13.7 years ago Thomas Girke ★ 1.7k
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2 more Job Announcements
Genetics Infrastructure Genetics Infrastructure
13.8 years ago Jenny Drnevich ★ 2.0k
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[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing Infrastructure Sequencing Infrastructure
14.0 years ago Ido M. Tamir ▴ 150
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"internal equal" overlap mode for GRangesList
Infrastructure Infrastructure
updated 14.2 years ago by ★ 1.6k • written 14.2 years ago by ★ 11k
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.2 years ago Mark Cowley ▴ 910
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1.9k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 14.8 years ago by 6.7k • written 14.8 years ago by ▴ 460
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A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
15.3 years ago Steve Lianoglou ★ 13k
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NOTE: bioconductor.org system maintenance; planned downtime 12pm-1pm PDT Friday 9/18
Infrastructure Infrastructure
16.3 years ago Patrick Aboyoun ★ 1.6k
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Research positions available in neuroproteomics
Proteomics Infrastructure Proteomics Infrastructure
16.8 years ago Abhilash Venu ▴ 340
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GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
16.9 years ago Paul Geeleher ★ 1.3k
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1.1k
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Project Enquiry!
Infrastructure Infrastructure
17.3 years ago Kat ▴ 20
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1.2k
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Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure Infrastructure
17.3 years ago Wolfgang Huber ★ 13k
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1
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1.7k
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GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 130
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Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.6 years ago Hans-Ulrich Klein ▴ 330
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1
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1.7k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.6 years ago by ★ 1.6k • written 17.6 years ago by 25k
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To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure biomaRt Infrastructure biomaRt
17.8 years ago Steffen ▴ 500
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biocep project - R for the Web and the Virtual R Workbench
Infrastructure PROcess Infrastructure PROcess
18.1 years ago kchine@ebi.ac.uk ▴ 10
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question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation Infrastructure Cancer Annotation Infrastructure Cancer
18.4 years ago Seth Falcon ★ 7.4k
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2x2 factorial with dye effect, limma design
Microarray Infrastructure Microarray Infrastructure
18.9 years ago Gordon Smyth 53k
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1.6k
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BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
19.2 years ago Seth Falcon ★ 7.4k
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1
reply
1.5k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 80
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extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 90
57 results • Page 1 of 2
Recent ...
Replies
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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