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masigpro
•
reset
3
votes
7
replies
5.8k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
0
votes
6
replies
1.7k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 5.7 years ago by
sbbinfo90
• 0 • written 10.6 years ago by
neeraj rana
▴ 60
4
votes
5
replies
2.2k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
6.3 years ago
nicolas.hipp
▴ 20
0
votes
5
replies
5.8k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 9 months ago by
Tatsuya
• 0 • written 8.9 years ago by
john
▴ 120
1
vote
3
replies
1.3k
views
masigpro: could not find function "negative.binomial"
masigpro
5.5 years ago
nicolas.descostes
▴ 20
0
votes
3
replies
1.4k
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 12.7 years ago by
Mª José Nueda
▴ 90 • written 12.7 years ago by
Andrea Grilli
▴ 240
0
votes
3
replies
1.4k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
3
replies
1.3k
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 15.0 years ago by
Ana Conesa
▴ 340 • written 15.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
3
replies
1.3k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 13.5 years ago by
Mª José Nueda
▴ 90 • written 13.5 years ago by
boczniak767
▴ 720
0
votes
3
replies
850
views
MaSigPro Single Series Analysis
maSigPro
updated 14 months ago by
guang-hui
• 0 • written 4.2 years ago by
dorothy.mitchell
• 0
0
votes
2
replies
804
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 3 months ago by
QINYAN
• 0 • written 3.7 years ago by
Olof.rundquist
• 0
0
votes
2
replies
1.4k
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
14.8 years ago
Dick Beyer
★ 1.4k
0
votes
2
replies
2.0k
views
maSigPro genes from clusters
masigpro
clustering
updated 7.8 years ago by
Mª José Nueda
▴ 90 • written 7.9 years ago by
ls299
• 0
0
votes
2
replies
1.3k
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
3.9 years ago • updated 3.3 years ago
daw277
• 0
0
votes
2
replies
833
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
DcL-A
• 0
0
votes
2
replies
1.2k
views
row with zeros
maSigPro
min.obs
p.vector
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 8.6 years ago by
gmdc
• 0
0
votes
2
replies
1.1k
views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
17.3 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.5k
views
maSigPro: error using see.genes()
masigpro
updated 6.1 years ago by
therealsisterdot
• 0 • written 7.0 years ago by
valentine.murigneux
• 0
0
votes
1
reply
1.2k
views
MaSigPro
maSigPro
maSigPro
updated 16.5 years ago by
Mª José Nueda
▴ 90 • written 16.5 years ago by
Narinder Singh Sahni
▴ 50
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.5 years ago by
jeremy wilson
▴ 150 • written 14.5 years ago by
Ana Conesa
▴ 340
0
votes
1
reply
1.8k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 13.9 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.2k
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 13.6 years ago by
avehna
▴ 240 • written 13.6 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.2k
views
Paired Data in maSigPro
maSigPro
maSigPro
13.4 years ago
Mike Walter
▴ 230
0
votes
1
reply
1.9k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 12.9 years ago by
Andrea Grilli
▴ 240 • written 12.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
1
reply
978
views
maSigPro dataset information
maSigPro
maSigPro
10.6 years ago
Guest User
★ 13k
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 10.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.7 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
1
reply
1.3k
views
maSigPro edesign and error message
masigpro
8.1 years ago
simonjean434
▴ 10
0
votes
1
reply
1.6k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
9.0 years ago
Ryan Goosen
• 0
1
vote
1
reply
913
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
itspilipineiro
• 0
0
votes
1
reply
1.3k
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
lalamig
• 0
0
votes
1
reply
966
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 3.4 years ago by
Mª José Nueda
▴ 90 • written 3.4 years ago by
Itzel
• 0
0
votes
1
reply
814
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
3.0 years ago
subashika
• 0
0
votes
1
reply
400
views
T.fit function of maSigPro returns error message
maSigPro
7 months ago
hanna.g
• 0
0
votes
0
replies
1.1k
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
6.4 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
0
replies
807
views
maSigPro groups comparisons
masigpro
7.8 years ago
ls299
• 0
0
votes
0
replies
1.0k
views
MaSigPro - pre-filtering of genes
MaSigPro
8.2 years ago
GFM
▴ 20
0
votes
0
replies
1.1k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
12.9 years ago
Andrea Grilli
▴ 240
1
vote
0
replies
497
views
Normalization RNA-seq data maSigPro
maSigPro
21 months ago
W.a.m.dekker
▴ 10
0
votes
0
replies
1.2k
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
13.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
0
replies
1.4k
views
maSigPro time problem (2.trial)
maSigPro
maSigPro
15.0 years ago
Klaus-Peter Pleissner
▴ 70
0
votes
0
replies
1.2k
views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
17.5 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
978
views
Block design for maSigPro
masigpro
timecourse
7.7 years ago
sanj
▴ 20
0
votes
0
replies
278
views
maSigPro drug concentration
maSigPro
8 months ago
jiawen
• 0
0
votes
0
replies
6.3k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
6.9 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
435
views
maSigPro visualizing individually each plot from each cluster
plot
maSigPro
Clustering
20 months ago
oseias.rf.junior
• 0
50 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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