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MaSigPro
•
reset
0
votes
1
reply
407
views
T.fit function of maSigPro returns error message
maSigPro
7 months ago
hanna.g
• 0
0
votes
0
replies
284
views
maSigPro drug concentration
maSigPro
8 months ago
jiawen
• 0
0
votes
5
replies
5.8k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 9 months ago by
Tatsuya
• 0 • written 8.9 years ago by
john
▴ 120
0
votes
3
replies
856
views
MaSigPro Single Series Analysis
maSigPro
updated 14 months ago by
guang-hui
• 0 • written 4.2 years ago by
dorothy.mitchell
• 0
0
votes
0
replies
440
views
maSigPro visualizing individually each plot from each cluster
plot
maSigPro
Clustering
20 months ago
oseias.rf.junior
• 0
1
vote
0
replies
503
views
Normalization RNA-seq data maSigPro
maSigPro
21 months ago
W.a.m.dekker
▴ 10
0
votes
1
reply
820
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
3.0 years ago
subashika
• 0
0
votes
1
reply
970
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 3.4 years ago by
Mª José Nueda
▴ 90 • written 3.4 years ago by
Itzel
• 0
0
votes
2
replies
1.3k
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
3.9 years ago • updated 3.3 years ago
daw277
• 0
0
votes
2
replies
807
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 3 months ago by
QINYAN
• 0 • written 3.7 years ago by
Olof.rundquist
• 0
0
votes
2
replies
845
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
DcL-A
• 0
0
votes
1
reply
1.3k
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
lalamig
• 0
1
vote
3
replies
1.3k
views
masigpro: could not find function "negative.binomial"
masigpro
5.5 years ago
nicolas.descostes
▴ 20
0
votes
6
replies
1.7k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 5.7 years ago by
sbbinfo90
• 0 • written 10.6 years ago by
neeraj rana
▴ 60
0
votes
1
reply
1.5k
views
maSigPro: error using see.genes()
masigpro
updated 6.2 years ago by
therealsisterdot
• 0 • written 7.0 years ago by
valentine.murigneux
• 0
4
votes
5
replies
2.2k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
6.3 years ago
nicolas.hipp
▴ 20
3
votes
7
replies
5.8k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
0
votes
0
replies
1.1k
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
6.4 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
0
replies
943
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
6.6 years ago
veersingh.marwah
• 0
0
votes
0
replies
931
views
Iso-maSigPro errors in IsoModel and PodiumChange
masigpro
6.6 years ago
xin.zhou
• 0
1
vote
1
reply
914
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
itspilipineiro
• 0
0
votes
0
replies
6.3k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
7.0 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
984
views
Block design for maSigPro
masigpro
timecourse
7.8 years ago
sanj
▴ 20
0
votes
2
replies
2.0k
views
maSigPro genes from clusters
masigpro
clustering
updated 7.8 years ago by
Mª José Nueda
▴ 90 • written 7.9 years ago by
ls299
• 0
0
votes
0
replies
809
views
maSigPro groups comparisons
masigpro
7.8 years ago
ls299
• 0
0
votes
1
reply
1.3k
views
maSigPro edesign and error message
masigpro
8.1 years ago
simonjean434
▴ 10
0
votes
0
replies
1.0k
views
MaSigPro - pre-filtering of genes
MaSigPro
8.2 years ago
GFM
▴ 20
0
votes
1
reply
1.7k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.8 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 10.3 years ago by
Guest User
★ 13k
0
votes
2
replies
1.2k
views
row with zeros
maSigPro
min.obs
p.vector
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 8.6 years ago by
gmdc
• 0
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
1
reply
1.6k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
9.1 years ago
Ryan Goosen
• 0
0
votes
1
reply
980
views
maSigPro dataset information
maSigPro
maSigPro
10.6 years ago
Guest User
★ 13k
0
votes
3
replies
1.4k
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 12.7 years ago by
Mª José Nueda
▴ 90 • written 12.7 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.9k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 12.9 years ago by
Andrea Grilli
▴ 240 • written 12.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
13.0 years ago
Andrea Grilli
▴ 240
0
votes
0
replies
1.2k
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
13.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.2k
views
Paired Data in maSigPro
maSigPro
maSigPro
13.4 years ago
Mike Walter
▴ 230
0
votes
3
replies
1.3k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 13.5 years ago by
Mª José Nueda
▴ 90 • written 13.5 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.2k
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 13.6 years ago by
avehna
▴ 240 • written 13.6 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 14.0 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.8k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
3
replies
1.4k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 14.1 years ago by
Mª José Nueda
▴ 90 • written 14.1 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.5 years ago by
jeremy wilson
▴ 150 • written 14.5 years ago by
Ana Conesa
▴ 340
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
2
replies
1.4k
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
14.8 years ago
Dick Beyer
★ 1.4k
0
votes
3
replies
1.3k
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 15.0 years ago by
Ana Conesa
▴ 340 • written 15.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
0
replies
1.5k
views
maSigPro time problem (2.trial)
maSigPro
maSigPro
15.0 years ago
Klaus-Peter Pleissner
▴ 70
0
votes
1
reply
1.2k
views
MaSigPro
maSigPro
maSigPro
updated 16.5 years ago by
Mª José Nueda
▴ 90 • written 16.6 years ago by
Narinder Singh Sahni
▴ 50
50 results • Page
1 of 1
Recent ...
Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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