Showing : mast • reset
0
votes
0
replies
269
views
Confidence interval contains 0 but p<0.05
MAST
11 months ago Adelyn • 0
3
votes
3
replies
1.5k
views
Robust way of dealing with low number of samples for Differential Gene Expression
limma edgeR DESeq2 MAST
written 12 months ago by • 0
0
votes
1
reply
898
views
Which input data is acceptable for MAST?
SCTransform MAST
updated 13 months ago by ▴ 280 • written 13 months ago by • 0
0
votes
0
replies
483
views
Z-score Interpretation across components
MAST
14 months ago GJ • 0
0
votes
0
replies
522
views
MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
MAST
16 months ago Kelly • 0
0
votes
0
replies
789
views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
lmer MAST DifferentialExpression
16 months ago nhaus ▴ 70
1
vote
2
replies
1.3k
views
Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
0
votes
0
replies
1.0k
views
Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
0
replies
528
views
Comparing the effects of a condition over time in two seperate tissues
MAST
21 months ago Dillon • 0
0
votes
1
reply
992
views
Mismatch between MAST DE results and expression dot plot
MAST mastR
22 months ago Simon • 0
0
votes
0
replies
993
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
2.6 years ago Tadeoye ▴ 20
1
vote
7
replies
2.7k
views
Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
2.7 years ago Ken C • 0
0
votes
0
replies
813
views
MAST for single cell ATAC data
MAST
2.7 years ago zuljiamel1991 ▴ 10
2
votes
2
replies
2.9k
views
Input for MAST
MAST
2.8 years ago • updated 2.7 years ago zuljiamel1991 ▴ 10
0
votes
1
reply
2.4k
views
How to interpret MAST coefficients
DifferentialExpression MAST
updated 5 months ago by ▴ 10 • written 3.1 years ago by • 0
0
votes
1
reply
1.3k
views
How does MAST caculate log fc
MAST
3.2 years ago • updated 5 months ago Chenghao ▴ 10
0
votes
0
replies
1.2k
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
3.4 years ago Nik Tuzov ▴ 90
0
votes
0
replies
1.3k
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
3.5 years ago zroger499 • 0
0
votes
1
reply
1.6k
views
Low logFCs using MAST for scRNA-seq
MAST
updated 14 months ago by ▴ 70 • written 3.6 years ago by • 0
0
votes
0
replies
1.2k
views
Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
3.8 years ago zroger499 • 0
1
vote
0
replies
999
views
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
4.3 years ago Dan • 0
0
votes
1
reply
1.5k
views
Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
1
reply
1.4k
views
MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 4.5 years ago by • 0 • written 4.8 years ago by • 0
0
votes
1
reply
1.8k
views
How to do pairwise multiple comparisons in MAST
MAST
updated 16 months ago by • 0 • written 4.8 years ago by • 0
0
votes
2
replies
1.8k
views
MAST compare two conditions with several donors
MAST
updated 4.8 years ago by • 0 • written 5.0 years ago by • 0
0
votes
3
replies
2.0k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
5.3 years ago TriS ▴ 200
1
vote
3
replies
2.0k
views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 5.9 years ago by ▴ 280 • written 5.9 years ago by ▴ 10
0
votes
1
reply
2.0k
views
About getting DE genes using MAST
MAST
updated 5.9 years ago by ▴ 280 • written 5.9 years ago by • 0
0
votes
0
replies
1.3k
views
DEG among experimental and control group in MAST
MAST DEG batch effects
6.2 years ago chendianyu • 0
0
votes
1
reply
2.6k
views
Minimum number of cells required for the MAST
MAST scRNAseq differential expression
6.2 years ago Andrew_McDavid ▴ 280
2
votes
3
replies
1.8k
views
Logistic regression in MAST - question
mast
updated 6.7 years ago by ▴ 280 • written 6.7 years ago by ▴ 90
2
votes
7
replies
2.5k
views
Estimation of non-trivial contrasts in MAST
mast
updated 6.7 years ago by ▴ 280 • written 6.7 years ago by ▴ 90
0
votes
1
reply
1.7k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 20 months ago by ▴ 30 • written 6.8 years ago by • 0
0
votes
2
replies
1.8k
views
Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
7.2 years ago santos22903 • 0
0
votes
6
replies
2.2k
views
Error in zlm function model matrix
MAST
7.5 years ago jka8119 ▴ 10
2
votes
4
replies
2.6k
views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 7.6 years ago by ▴ 280 • written 7.6 years ago by ▴ 40
2
votes
1
reply
3.6k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 7.6 years ago by ▴ 280 • written 7.6 years ago by ▴ 20
2
votes
1
reply
1.5k
views
How to load data csv in MAST
mast
7.6 years ago francesco.brundu@gmail.com ▴ 40
0
votes
4
replies
1.9k
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
7.7 years ago dfm2129 • 0
0
votes
8
replies
2.6k
views
MAST - not getting Hurdle p values
MAST
updated 7.7 years ago by ▴ 280 • written 7.7 years ago by ▴ 10
2
votes
3
replies
2.8k
views
Using MAST with DropSeq data
MAST mast dropseq
updated 7.8 years ago by ▴ 280 • written 7.8 years ago by ▴ 10
5
votes
3
replies
2.9k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 7 months ago by ▴ 10 • written 7.9 years ago by ▴ 100
0
votes
2
replies
1.9k
views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
8.1 years ago alexanderaivazidis • 0
3
votes
3
replies
3.5k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 8.2 years ago by ▴ 280 • written 8.2 years ago by ▴ 40
4
votes
1
reply
2.5k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
8.3 years ago Andrew_McDavid ▴ 280
2
votes
1
reply
5.4k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 8.3 years ago by ▴ 280 • written 8.3 years ago by • 0
0
votes
3
replies
2.1k
views
Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 8.3 years ago by ▴ 280 • written 8.3 years ago by • 0
0
votes
1
reply
1.7k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
8.6 years ago Andrew_McDavid ▴ 280
3
votes
2
replies
3.0k
views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
8.6 years ago shao ▴ 100
49 results • Page 1 of 1
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
United States, 12 minutes ago
United States, 22 minutes ago
The city by the bay, 52 minutes ago
United States, 1 hour ago
Australia, 2 hours ago
Traffic: 731 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6