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0
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1.9k
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ChAMP package library loading error
methylation
package
9.5 years ago
sdeshpande
• 0
0
votes
1
reply
1.1k
views
I want to submit a package to Bioconductor by Github. But it always comes out an inexplicable problems
package
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
taosheng.x
• 0
1
vote
2
replies
1.5k
views
New package version submission
package
submit package
package updates
9.6 years ago
francescodc87
• 0
6
votes
0
replies
1.4k
views
News:
New Package Submission Process
news
package
submit package
News
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Valerie Obenchain
★ 6.8k
4
votes
3
replies
3.5k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 9.9 years ago by
Paul Shannon
▴ 470 • written 9.9 years ago by
Henrik Bengtsson
★ 2.4k
13
votes
1
reply
3.5k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
10.1 years ago
Martin Morgan
25k
0
votes
2
replies
1.6k
views
R package for molecule interactions?
r
package
function
interactions
10.2 years ago
amyfm
▴ 10
1
vote
6
replies
3.1k
views
Detect short tandem repetitions from bam file
bam
short tandem repetitions
package
10.3 years ago • updated 10.2 years ago
Pau Marc Muñoz Torres
▴ 20
2
votes
3
replies
3.5k
views
package for sex determination using sam/bam files
software
sex
package
10.3 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
3
replies
3.1k
views
DLL maps not found while compiling package in Windows machine
package
compilation error
dll
windows
10.3 years ago
Miguel Juliá
• 0
0
votes
4
replies
4.1k
views
Biostrings throwing error
biostrings
installation
package
keepNA
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
prim-and-proper
• 0
2
votes
2
replies
7.2k
views
package install issue (ubuntu 14.04, R 3.2.1)
package
installation
10.5 years ago
doublehelixlf
▴ 10
0
votes
0
replies
1.2k
views
CNTools package lead R to abort
CNTools
package
10.6 years ago
sircoulombf
• 0
0
votes
2
replies
1.1k
views
Update a package in a older relase
package
updated 10.6 years ago by
James W. MacDonald
68k • written 10.6 years ago by
gobbi.andrea
• 0
0
votes
1
reply
2.4k
views
Graph viewer for Reactome Pathways
bioconductor
package
reactome
graph
updated 10.6 years ago by
Johannes Rainer
★ 2.1k • written 10.6 years ago by
Deepak Tanwar
▴ 10
5
votes
3
replies
2.2k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
10.7 years ago
flying-sheep
▴ 10
2
votes
1
reply
9.7k
views
Problems to install a package - Ubuntu
ubuntu
package
installation
varianttools
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
lelemraposo
▴ 10
0
votes
2
replies
4.9k
views
package ‘ComplexHeatmap’ is not available
software error
package
updated 10.8 years ago by
Guangchuang Yu
★ 1.2k • written 10.8 years ago by
duygu.ozcelik
• 0
1
vote
3
replies
2.4k
views
question about the EdgeR package: additive models and blocking
package
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Fix Ace
▴ 100
0
votes
3
replies
2.6k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
kanacska
▴ 10
1
vote
2
replies
1.6k
views
How to build a non "gene-centered" annotation package using SQLForge ?
annotation
package
custom
microarray
11.0 years ago
becker.jeremie
• 0
2
votes
5
replies
2.1k
views
Submitting R packages with external data
package
updated 11.0 years ago by
Andrzej Oleś
▴ 750 • written 11.0 years ago by
vittorio.fortino
• 0
9
votes
6
replies
2.4k
views
package specifically dedicated to a manuscript
package
guidelines
11.0 years ago
petyuk
▴ 70
1
vote
3
replies
1.3k
views
new submission : waiting duration
package
11.1 years ago
kmezhoud
▴ 10
74 results • Page
2 of 2
Recent ...
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Comment: Combining two proteomics datasets with limpa
by
Andrew Pattison
• 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
I think that some historical context will help here. Aaron Lun was a PhD student in my Lab back in 2015, and the analysis approach that he …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Julia Broadbent
• 0
Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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