Showing : pdinfobuilder • reset
0
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368
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Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
5 months ago Seymoo • 0
2
votes
8
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1.8k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
4.2 years ago • updated 4.1 years ago efoss ▴ 10
2
votes
3
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1.8k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
6
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4
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3.3k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 5.8 years ago by ▴ 10 • written 8.3 years ago by ▴ 20
0
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7
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2.3k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 510
1
vote
3
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3.5k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
8.5 years ago yusuf.khan ▴ 10
3
votes
7
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2.1k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 8.9 years ago by 68k • written 9.5 years ago by ★ 4.1k
1
vote
5
replies
3.0k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
9.0 years ago Ed D • 0
0
votes
3
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3.0k
views
Draft support for HTA 2.0 with oligo
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 9.1 years ago by ▴ 10 • written 11.5 years ago by ▴ 10
1
vote
0
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2.6k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo pdInfoBuilder pd.hta.2.0
10.2 years ago tangboyun ▴ 30
0
votes
2
replies
1.5k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 10.2 years ago by 68k • written 10.2 years ago by • 0
0
votes
5
replies
2.1k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
10.5 years ago • updated 10.4 years ago alakatos ▴ 130
1
vote
3
replies
2.9k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 11.0 years ago by 68k • written 11.1 years ago by ▴ 40
0
votes
1
reply
1.6k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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0
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1.7k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
11.4 years ago Elena Serrano ▴ 30
0
votes
0
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2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.4 years ago Elena Serrano ▴ 30
0
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4
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6.7k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 60
0
votes
3
replies
1.4k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 60
0
votes
1
reply
2.0k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.6 years ago by ▴ 910 • written 11.6 years ago by ★ 4.3k
0
votes
0
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3.7k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.6 years ago Elena Serrano ▴ 30
0
votes
1
reply
2.4k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 11.8 years ago by ★ 4.3k • written 11.8 years ago by ▴ 290
0
votes
1
reply
1.5k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 11.9 years ago by ▴ 190 • written 11.9 years ago by ▴ 100
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.0 years ago by ▴ 50 • written 12.0 years ago by ★ 4.3k
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.0 years ago Nitesh Turaga ▴ 50
0
votes
1
reply
1.6k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.1 years ago by ★ 4.3k • written 12.0 years ago by ▴ 50
0
votes
4
replies
2.0k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 140
0
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10
replies
3.7k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 12.3 years ago by ★ 4.3k • written 12.3 years ago by ★ 13k
0
votes
7
replies
2.1k
views
install pdInfoBuilder package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 12.8 years ago by ★ 4.3k • written 12.8 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Nimblegen microarray MM8_60mer_expr
Microarray Annotation oligo pdInfoBuilder Microarray Annotation oligo pdInfoBuilder
12.9 years ago Benilton Carvalho ★ 4.3k
0
votes
4
replies
2.0k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 12.9 years ago by ▴ 50 • written 12.9 years ago by ★ 13k
0
votes
3
replies
2.3k
views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ▴ 20
0
votes
2
replies
1.6k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 13.3 years ago by 6.7k • written 13.3 years ago by ▴ 340
0
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0
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1.5k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.4 years ago zeynep özkeserli ▴ 160
0
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0
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1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.4 years ago zeynep özkeserli ▴ 160
0
votes
2
replies
1.6k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ★ 13k
0
votes
2
replies
1.7k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 630
0
votes
0
replies
1.8k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
14.2 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
1
reply
1.2k
views
pdInfoBuilder
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 14.4 years ago by ★ 4.3k • written 14.4 years ago by ▴ 40
0
votes
3
replies
1.5k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 14.6 years ago by 6.7k • written 14.6 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
15.2 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
2
replies
1.3k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 100
0
votes
3
replies
1.4k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ★ 4.1k
0
votes
8
replies
2.5k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 15.4 years ago by 6.7k • written 15.4 years ago by ★ 4.1k
0
votes
6
replies
2.1k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 40
0
votes
0
replies
986
views
TilingFeatureSet
GO pdInfoBuilder GO pdInfoBuilder
15.7 years ago Diego Martinez ▴ 10
0
votes
1
reply
1.5k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 15.8 years ago by ▴ 430 • written 15.8 years ago by ▴ 410
0
votes
2
replies
2.1k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 15.9 years ago by ▴ 50 • written 15.9 years ago by ▴ 330
0
votes
0
replies
1.2k
views
problem with pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
16.3 years ago Elsa Aguera ▴ 10
0
votes
0
replies
1.3k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
16.5 years ago James W. MacDonald 68k
0
votes
3
replies
1.9k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
16.6 years ago Anne-Marie Madore ▴ 30
59 results • Page 1 of 2
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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740
@atpoint Should I first standardise data and then average replicates?
Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0
Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…
Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k
What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0
Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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