Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
results
•
reset
1
vote
1
reply
907
views
HISAT2 mapping
hisat2
results
updated 22 months ago by
ATpoint
★ 4.6k • written 22 months ago by
ali
• 0
0
votes
1
reply
3.5k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
Chiara
• 0
1
vote
2
replies
3.4k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.9 years ago
james
• 0
3
votes
6
replies
2.8k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
paula.vaccarello
• 0
2
votes
2
replies
1.0k
views
DESeq results gives all genes
deseq2
design matrix
results
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
evocanres
• 0
0
votes
1
reply
1.1k
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
batmaiden
• 0
0
votes
3
replies
1.2k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
jan.soderman
• 0
1
vote
3
replies
1.3k
views
Results counts post DESeq same raw counts
DESeq2
results
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
A
▴ 40
0
votes
0
replies
921
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.8 years ago
414457044
• 0
0
votes
5
replies
1.5k
views
results {DESeq2} parameters
deseq2
results
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Aurora
▴ 20
2
votes
5
replies
1.8k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 7.2 years ago by
Michael Love
43k • written 7.8 years ago by
tarun2
• 0
2
votes
4
replies
1.6k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 7.2 years ago by
Steve Lianoglou
★ 13k • written 7.2 years ago by
kritikamish99
▴ 10
3
votes
2
replies
4.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
7.3 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.7k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.9k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.9k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
bhgyu
▴ 30
1
vote
6
replies
2.2k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
wariobrega
• 0
4
votes
4
replies
2.1k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
8.7 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 9.4 years ago by
Michael Love
43k • written 9.4 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
5.2k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 9.5 years ago by
Michael Love
43k • written 9.5 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.3k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 9.5 years ago by
Michael Love
43k • written 9.5 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.7k
views
limma multiple rows per gene in output (write.fit)
limma
results
9.7 years ago
Anne
• 0
2
votes
15
replies
3.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.8 years ago • updated 9.7 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Awards
• All
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Robert Ivanek
▴ 750
Locations
• All
Canada,
2 minutes ago
WEHI, Melbourne, Australia,
8 minutes ago
United States,
1 hour ago
Canada,
1 hour ago
France/Marseille/Inserm,
1 hour ago
Traffic: 689 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6