Showing : results • reset
1
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1.1k
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HISAT2 mapping
hisat2 results
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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1
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4.3k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
1
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2
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3.7k
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error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.7 years ago james • 0
3
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6
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3.2k
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DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2 results DESeqResults
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
2
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2
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1.2k
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DESeq results gives all genes
deseq2 design matrix results
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
0
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1
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1.3k
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Basemean always multiples of 0.5 in deseq2 results
deseq results baseMean
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
0
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3
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1.4k
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A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
1
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3
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1.5k
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Results counts post DESeq same raw counts
DESeq2 results
updated 7.5 years ago by 43k • written 7.5 years ago by ▴ 60
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0
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1.1k
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[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO() results
7.6 years ago 414457044 • 0
0
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5
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1.8k
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results {DESeq2} parameters
deseq2 results
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 20
2
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5
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2.0k
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DEGs generation parameters and specificities
deseq2 results design and contrast matrix
updated 8.0 years ago by 43k • written 8.5 years ago by • 0
2
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4
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1.8k
views
Tac and Bioconductor giving different results
Tac bioconductor results reproducbiltiy
updated 8.0 years ago by ★ 13k • written 8.0 years ago by ▴ 10
3
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2
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4.5k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
8.0 years ago hs.lansdell ▴ 20
2
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8
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1.9k
views
Deseq2 result for a variable
deseq2 differential expression results
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 10
2
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5
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6.3k
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DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2 results contrast padj
updated 8.4 years ago by 43k • written 8.4 years ago by • 0
2
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5
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4.6k
views
Limma toptable interpretation check
limma microarray fdr p-value results
updated 8.4 years ago by ★ 29k • written 8.4 years ago by ▴ 30
1
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6
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2.5k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster multiple time points deseq2 results development
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
4
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4
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2.4k
views
Deseq2 results interpretation
deseq2 multiple factor design results
9.4 years ago koeniger ▴ 10
5
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6
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18k
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Group comparison in DESeq2
deseq2 results
updated 10.2 years ago by 43k • written 10.2 years ago by ▴ 20
6
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2
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5.4k
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All same padj of contrast results in the DESeq2
deseq2 padj contrast results
updated 10.2 years ago by 43k • written 10.2 years ago by ▴ 20
0
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3
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2.5k
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Getting different results with DESeq2
deseq2 results rstudio
updated 10.3 years ago by 43k • written 10.3 years ago by ▴ 10
5
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4
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3.9k
views
limma multiple rows per gene in output (write.fit)
limma results
10.4 years ago Anne • 0
2
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15
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4.3k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.6 years ago • updated 10.5 years ago mnaymik ▴ 10
23 results • Page 1 of 1
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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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