Showing : results • reset
1
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1
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1.2k
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HISAT2 mapping
hisat2 results
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
0
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1
reply
4.4k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
1
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2
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3.8k
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error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.9 years ago james • 0
3
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6
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3.4k
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DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2 results DESeqResults
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
2
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2
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1.2k
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DESeq results gives all genes
deseq2 design matrix results
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
0
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1
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1.3k
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Basemean always multiples of 0.5 in deseq2 results
deseq results baseMean
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
0
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3
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1.5k
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A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
1
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3
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1.6k
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Results counts post DESeq same raw counts
DESeq2 results
updated 7.8 years ago by 43k • written 7.8 years ago by ▴ 60
0
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0
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1.1k
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[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO() results
7.8 years ago 414457044 • 0
0
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5
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1.9k
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results {DESeq2} parameters
deseq2 results
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 20
2
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5
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2.1k
views
DEGs generation parameters and specificities
deseq2 results design and contrast matrix
updated 8.2 years ago by 43k • written 8.8 years ago by • 0
2
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4
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1.9k
views
Tac and Bioconductor giving different results
Tac bioconductor results reproducbiltiy
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 10
3
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2
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4.6k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
8.2 years ago hs.lansdell ▴ 20
2
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8
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2.0k
views
Deseq2 result for a variable
deseq2 differential expression results
updated 8.3 years ago by 43k • written 8.3 years ago by ▴ 10
2
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5
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6.4k
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DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2 results contrast padj
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
2
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5
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4.9k
views
Limma toptable interpretation check
limma microarray fdr p-value results
updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 30
1
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6
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2.6k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster multiple time points deseq2 results development
updated 8.9 years ago by 43k • written 8.9 years ago by • 0
4
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4
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2.5k
views
Deseq2 results interpretation
deseq2 multiple factor design results
9.7 years ago koeniger ▴ 10
5
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6
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18k
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Group comparison in DESeq2
deseq2 results
updated 10.4 years ago by 43k • written 10.4 years ago by ▴ 20
6
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2
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5.5k
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All same padj of contrast results in the DESeq2
deseq2 padj contrast results
updated 10.4 years ago by 43k • written 10.4 years ago by ▴ 20
0
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3
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2.6k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 10.5 years ago by 43k • written 10.5 years ago by ▴ 10
5
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4
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4.0k
views
limma multiple rows per gene in output (write.fit)
limma results
10.6 years ago Anne • 0
2
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15
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4.6k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.8 years ago • updated 10.7 years ago mnaymik ▴ 10
23 results • Page 1 of 1
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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