Bioconductor Rna-seq

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305

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rna-seq edgeR

updated 9 days ago by Gordon Smyth 50k • written 22 days ago by Netanel • 0

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905

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.1k • written 6.0 years ago by saad_k6 • 0

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305

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RNA-Seq WGCNA Worms

5 months ago davca • 0

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693

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RNA-seq DESeq2

6 months ago ar14g12 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.6k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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646

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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859

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BatchEffect lfcshrink RNA-seq DESeq2

8 months ago Eva ▴ 10

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676

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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706

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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845

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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7.8k

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deseq2 edgeR rna-seq

updated 11 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

16 results • Page 1 of 1

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Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Robert for an educative response!

Votes

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)

Comment: Why p value inconsistent when using different number of pathway score?

Awards • All

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260