Bioconductor S4

Showing : s4 • reset

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1.0k

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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832

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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789

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.8k • written 4.1 years ago by muad.abdelhay ▴ 10

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651

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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981

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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724

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S4 deseq2

updated 5.2 years ago by swbarnes2 ★ 1.3k • written 5.2 years ago by shintzen • 0

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1.0k

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s4 methods SummarizedExperiment

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by brendan.innes ▴ 20

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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990

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

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1.7k

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rnbeads error as.vector(data) s4vectors s4

8.6 years ago schasse • 0

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5.1k

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updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by Koen Van den Berge ▴ 180

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2.6k

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lumi S4

9.1 years ago Chi Hong • 0

17 results • Page 1 of 1

Recent ...

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Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Votes

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length