Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
software error
•
reset
2
votes
2
replies
1.4k
views
biomart webservice error when using data from Phytozome
software error
go
5.4 years ago
e.lopez-cortegano
• 0
0
votes
4
replies
1.1k
views
DEXSEQ error (no counts falling in this gene, there is nothing to plot).
software error
updated 5.4 years ago by
Kevin Blighe
★ 4.0k • written 5.4 years ago by
huck.thornton
▴ 10
0
votes
0
replies
839
views
The error when using "coMET" package
software error
annotation
5.4 years ago
yueli.yao
• 0
0
votes
3
replies
888
views
DEXSEQ error (subscript out of boundsflattenedFile)
software error
5.4 years ago
huck.thornton
▴ 10
2
votes
1
reply
1.2k
views
bioCLite instalation failed
software error
5.4 years ago
emily.biostats.1999
• 0
1
vote
2
replies
836
views
DEXSeq Illegal Strand Error
software error
5.4 years ago
huck.thornton
▴ 10
0
votes
2
replies
1.4k
views
GenomicFeatures load problem : "namespaceExport(ns, exports): undefined exports: %>%"
software error
updated 5.4 years ago by
Martin Morgan
25k • written 5.5 years ago by
shipy3
• 0
1
vote
1
reply
1.3k
views
Error when installing edgeR and DESeq package
software error
packages
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
yassiflower
• 0
0
votes
1
reply
1.3k
views
namespace conflict flowAI and ggCyto
software error
flow cytometry
ggcyto
flowAI
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
Robert Baer
▴ 70
4
votes
8
replies
3.4k
views
Don't let TopGo to trimm long GO names
go
software error
topgo
rna-seq
updated 2.8 years ago by
James W. MacDonald
68k • written 5.5 years ago by
morteza.aslanzadeh
▴ 30
2
votes
7
replies
8.8k
views
Error wth Installation BiocManager
software error
updated 3.8 years ago by
weiran
• 0 • written 5.5 years ago by
hasmikmd
▴ 10
0
votes
5
replies
2.1k
views
Error with using getBM function in biomaRt
go
r
software error
R
biomaRt
5.5 years ago
morteza.aslanzadeh
▴ 30
1
vote
2
replies
1.5k
views
Cannot Install gmapR Bioconductor Package
software error
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
kwon.daniel
• 0
0
votes
1
reply
427
views
Bogdan Popescu, PhD
software error
5.5 years ago
tableta.ntrig
• 0
0
votes
1
reply
508
views
plot function in flowType under R4.0.0
software error
5.5 years ago
lifengt
• 0
0
votes
2
replies
644
views
about function parameters
software error
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
1006920318
• 0
0
votes
4
replies
2.0k
views
Error attaching TIN
software error
GO.db
TIN
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
AB3
• 0
0
votes
1
reply
2.1k
views
Error while installing GSVA
software error
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
SE
▴ 10
0
votes
0
replies
1.4k
views
ChIPseeker error when I wnat to get tagMatrix
Chipseeker
TxDb
getpromoters
software error
5.5 years ago
hfyuan2016
• 0
0
votes
9
replies
2.7k
views
i can't install metade package
software error
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
1006920318
• 0
0
votes
1
reply
534
views
Server disk full for archived biomaRt database
software error
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
g.hemani
• 0
1
vote
1
reply
703
views
RMarkdown in combination with OUTRIDER
software error
updated 2.9 years ago by
Christian Mertes
• 0 • written 5.5 years ago by
m.plandsoen
▴ 10
0
votes
4
replies
1.3k
views
ProFIA package error for noise estimation
software error
proFIA
HRMS
FIA
Metabolomics
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
Esther G.
• 0
4
votes
5
replies
2.7k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error
AnnotationForge
AnnotationDbi
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
jdiaz
• 0
4
votes
2
replies
2.3k
views
The Mac version of R always reports an error when installing WGCNA
software error
WGCNA
mac
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
562125035
• 0
1
vote
3
replies
2.3k
views
Installation of Rgraphviz fails - missing gvc.h
software error
Rgraphviz
updated 2.3 years ago by
Pranav
• 0 • written 5.5 years ago by
gvds
• 0
2
votes
4
replies
2.8k
views
Packages not working with R 4.0
software error
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
nanderson
• 0
1
vote
5
replies
3.2k
views
ComplexHeatmap - R Session aborted after calling Heatmap()
software error
Tutorial
updated 5.6 years ago by
Zuguang Gu
▴ 290 • written 5.6 years ago by
AR3513
• 0
2
votes
8
replies
2.8k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
bnajafpour
• 0
0
votes
1
reply
933
views
function plotgenomicregions does not appear in the aspli package installed in windows
software error
aspli
plotgenomicregions
windows
5.6 years ago
joanmarquez21
• 0
0
votes
1
reply
1.3k
views
DEXseq conversion of GTF to GFF creating incorrect exon coordinates
software error
DEXSeq
5.6 years ago
knuppdav
• 0
2
votes
2
replies
538
views
simulateSV using Granges generates the error of "No regions on given chromosomes"
software error
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
mawen8898
▴ 10
1
vote
4
replies
2.3k
views
Data Structure for Read Count Analysis by DESeq2
deseq2
software error
updated 5.6 years ago by
swbarnes2
★ 1.4k • written 5.6 years ago by
Hamidreza Hashemi
▴ 20
1
vote
2
replies
873
views
Data Structure for Read Count Analysis by DESeq2
deseq2
software error
updated 5.6 years ago by
mar.pieraccioli
▴ 10 • written 5.6 years ago by
Hamidreza Hashemi
▴ 20
2
votes
4
replies
7.2k
views
Error while installing hdf5 via BiocManager
software error
updated 5.6 years ago by
Mike Smith
★ 6.6k • written 5.6 years ago by
biok0423
▴ 20
0
votes
4
replies
3.2k
views
Error in installing BiocManager
software error
5.6 years ago
biok0423
▴ 20
0
votes
1
reply
744
views
ATACseqQC and Rsamtools scanBam
software error
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
gleuzzi.gl
• 0
0
votes
0
replies
886
views
Bug(?) with GUID
flowAI
software error
5.6 years ago
christopher.hall
• 0
0
votes
1
reply
1.1k
views
can download the r packages via crane
software error
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
1768142076
• 0
0
votes
5
replies
4.8k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 5.6 years ago by
shepherl
4.2k • written 5.6 years ago by
hoonhuiyi
• 0
1
vote
2
replies
2.0k
views
Is this an issue? "Error in (function (x) : attempt to apply non-function" when calling tximeta::summarizeToGene(se) for the first time with some da…
software error
tximeta
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
kalavattam
▴ 10
0
votes
1
reply
2.7k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest
software error
pathways
modules
kegg
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
predeus
• 0
0
votes
0
replies
329
views
EBSeqHMM EBSeqHMMTest function error
software error
5.6 years ago
xinyunie
• 0
0
votes
2
replies
574
views
SWATH2stats Package installation error
software error
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
jchristie
• 0
0
votes
0
replies
919
views
Error in bmRequest - Internal Server Error (HTTP 500)
software error
5.6 years ago
alexch.liu
• 0
0
votes
1
reply
1.7k
views
Is LFC shrinkage necessary for all data?
deseq2
software error
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
junli1988
• 0
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error
go
annotation
clusterProfiler
updated 2.6 years ago by
tarltonuk2089
• 0 • written 5.6 years ago by
tianshenbio
• 0
2
votes
2
replies
834
views
BioMart Error 28
software error
biomart
error28
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
heiko_kin
▴ 60
2
votes
4
replies
2.0k
views
After successful installation of package why it shows that Error?
software error
microarray
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
rabiulauwul
▴ 20
0
votes
0
replies
494
views
"Convert data" problem [SOLVED]
software error
5.6 years ago
alexandre.dos-santos
• 0
704 results • Page
2 of 15
Recent ...
Replies
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Kevin Blighe
★ 4.0k
There are alternative explanations for why these samples are so similar. The similarity could result from low biological variability in gen…
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Awards
• All
Scholar
to
Gordon Smyth
53k
Popular Question
to
shepherl
4.2k
Supporter
to
fabio.marroni
• 0
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
James W. MacDonald
68k
Locations
• All
United States,
6 minutes ago
Germany,
13 minutes ago
United States,
13 minutes ago
United States,
48 minutes ago
The city by the bay,
52 minutes ago
Traffic: 833 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6