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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
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0
I will follow what you suggested.
I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
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James W. MacDonald
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Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
•
0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
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James W. MacDonald
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I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
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