Bioconductor Warning

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2.7k

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rmarkdown suppressWarning warning

updated 2.1 years ago by Mike Smith ★ 6.6k • written 3.3 years ago by Wolfgang Huber ★ 13k

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BioGenerics warning

4.8 years ago ullrich ▴ 20

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DelayedArray warning installation

updated 4.8 years ago by Hervé Pagès 16k • written 4.8 years ago by inzirio ▴ 10

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Bioconductor CMD check warning

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by dong ▴ 10

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PureCN Warning

updated 6.9 years ago by markus.riester ▴ 130 • written 6.9 years ago by twtoal ▴ 10

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bioconductor package development R roxygen2 warning

7.4 years ago clarisbaby • 0

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bioccheck roxygen2 warning bioc-devel package development

updated 7.4 years ago by Lluís Revilla Sancho ▴ 760 • written 7.4 years ago by Paul Brennan ▴ 10

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warning text read.delim

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by niutster • 0

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dexseq fit matrix warning

updated 3.4 years ago by koushik • 0 • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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warning message warning R rhdf5

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by matiasb • 0

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MakeTXDCfromUCSC GenomicFeatures warning

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by Lillyhchen ▴ 10

11 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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