Showing : wgcna • reset
0
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2
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352
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wgcna module preseravtion taking too long?
WGCNA
written 10 weeks ago by • 0
1
vote
2
replies
446
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Can limma be used with module eigengenes instead of genes?
limma WGCNA GSVA
written 6 months ago by ▴ 20
0
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1
reply
1.1k
views
WGCNA
WGCNA DESeq2
updated 10 months ago by ★ 5.0k • written 10 months ago by • 0
0
votes
4
replies
878
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Issue with Soft-Thresholding in WGCNA
WGCNA
written 11 months ago by • 0
0
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5
replies
1.1k
views
WGCNA
WGCNA Normalization RNASeq
written 12 months ago by • 0
0
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1
reply
961
views
In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowick TomType
WGCNA pickSoftThreshold SignedNowick
updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
0
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1
reply
393
views
Ph.D. scholar
WGCNA DataNormalization MicroarrayData
updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
0
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2
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719
views
WGCNA: Can we use high power (26) for signed network?
Networkanalysis RNA-seqdata Powerselection WGCNA
13 months ago Vinesh • 0
0
votes
1
reply
780
views
WGCNA sample-data preprocessing order
Microarray WGCNA GeneExpression
updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
0
votes
1
reply
844
views
WGCNA with TPM tables
RNASeq WGCNA ComparativeGenomics
updated 15 months ago by ★ 5.0k • written 15 months ago by • 0
0
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0
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569
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WGCNA module preservation using only adjacency matrix
WGCNA
15 months ago yang1641 • 0
3
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4
replies
1.9k
views
What should be the normalization protocol for RNA seq data for WGCNA?
RNA_seqdata Normalization_method WGCNA
16 months ago sukeshinik5 ▴ 20
1
vote
1
reply
1.0k
views
WGCNA
DEGselection RNASeqData WGCNA
updated 16 months ago by ▴ 760 • written 16 months ago by • 0
0
votes
0
replies
679
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
17 months ago Fernanda • 0
0
votes
1
reply
842
views
WGCNA Choosing soft threshold power below R^2 0.8
WGCNA
updated 17 months ago by ▴ 760 • written 17 months ago by • 0
0
votes
1
reply
812
views
Ideal approach to adjust for covariates for WGCNA
WGCNA wgcna
updated 17 months ago by 68k • written 17 months ago by • 0
0
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0
replies
605
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq WGCNA
21 months ago k200987 • 0
0
votes
2
replies
1.0k
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
23 months ago Gimena • 0
0
votes
2
replies
1.1k
views
WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
23 months ago w.cookson • 0
0
votes
1
reply
760
views
problem with ClusterRepro function
WGCNA
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
1
reply
1.4k
views
WGCNA | plotDendroAndColors ERROR
plotDendroAndColor WGCNA
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
0
votes
2
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1.8k
views
Trouble generating a dendrogram with colored gene modules using WGCNA for large RNA-seq experiment
WGCNA
written 2.2 years ago by • 0
4
votes
3
replies
3.3k
views
WGCNA documentation not available
WGCNA
written 2.2 years ago by ▴ 10
1
vote
2
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2.1k
views
Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData WGCNA consensusnetworks
2.2 years ago Levi • 0
0
votes
2
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892
views
WGCNA less samples
RNA-Seq WGCNA Worms
2.3 years ago davca • 0
0
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1
reply
1.1k
views
WGCNA tutorial docs needed: Horvath Lab site down
WGCNA
updated 2.3 years ago by ★ 5.0k • written 2.3 years ago by • 0
1
vote
2
replies
1.4k
views
How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
WGCNA
written 2.3 years ago by ▴ 10
0
votes
1
reply
913
views
TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
TOMsimilarityFromExpr WGCNA
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by • 0
0
votes
1
reply
5.2k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network cluster WGCNA RNASeq
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
1
vote
1
reply
1.0k
views
WGCNA Cluster batch effect
BatchEffect TCGA WGCNA
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
0
votes
1
reply
1.6k
views
Hub genes selection in WGCNA
wgcna WGCNA hubgene
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 20
2
votes
5
replies
2.5k
views
DESeq2 remove batch effect
BatchEffect RNASeqData WGCNA DESeq2
updated 22 months ago by • 0 • written 2.7 years ago by • 0
3
votes
6
replies
1.7k
views
Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 2.7 years ago by 53k • written 2.8 years ago by ▴ 10
1
vote
0
replies
1.1k
views
WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 2.7 years ago by 43k • written 2.8 years ago by ▴ 20
2
votes
1
reply
1.2k
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 2.7 years ago by ▴ 50 • written 2.8 years ago by ▴ 10
0
votes
0
replies
890
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
2.8 years ago Levi • 0
3
votes
7
replies
2.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.8 years ago Ortega-C ▴ 10
0
votes
1
reply
957
views
WGCNA for one perturbation time series (pooled from two independent replicates)?
WGCNA
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
0
votes
0
replies
1.1k
views
Problems with the input (from TPM) - How to remove isoforms in WGCNA
Arabidopsis_thaliana removeisoforms WGCNA
2.9 years ago • updated 2.8 years ago Ortega-C ▴ 10
0
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2
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1.2k
views
WGCNA problem
WGCNA
updated 2.8 years ago by ▴ 10 • written 2.9 years ago by • 0
0
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4
replies
5.8k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 2.9 years ago by • 0
0
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0
replies
1.1k
views
WGCNA approach on multiregional brain transcriptomes
Neurotranscriptome RNAseq WGCNA
2.9 years ago Levi • 0
0
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0
replies
855
views
Module Trait Corelation
WGCNA
2.9 years ago allanokwaro • 0
2
votes
3
replies
2.0k
views
Batch correction and Deseq2
DESeq2 WGCNA Normalization NormalyzerDE BatchEffect
updated 2.9 years ago by ★ 5.0k • written 3.0 years ago by ▴ 20
0
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0
replies
982
views
How to draw module significance barplot?
module_significance barplot WGCNA
3.0 years ago Sooni ▴ 10
0
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0
replies
925
views
Multiple way network preservation
wgcna
3.0 years ago madzayasodara • 0
0
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0
replies
1.0k
views
WGCNA TOM file empty
WGCNA TOM
3.1 years ago gianni.drm • 0
0
votes
0
replies
1.7k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
3.1 years ago gianni.drm • 0
0
votes
1
reply
1.7k
views
WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 24 months ago by ▴ 740 • written 3.1 years ago by • 0
0
votes
1
reply
909
views
In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 3.1 years ago by ▴ 50 • written 3.1 years ago by • 0
336 results • Page 1 of 7
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Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
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SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
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Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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