Bioconductor Windows

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import.bw rtracklayer Windows http

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deseq2 bioconductor windows xml installation

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software error aspli plotgenomicregions windows

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software error BigWig import windows

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software error R windows

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HiTC IRanges windows debian

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pthread windows tokay2

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R h5ls windows linux

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bioconductor R windows diffbind

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windows variantannotation makevars.win

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rhdf5 windows

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package compilation error dll windows

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Install RMySQL Windows

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

No, you are not losing power. The two possible limma analyses (fixed or random Subject effects) are both more powerful than the alternative…

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Thanks Gordon Actually, I am working in the clinical statistics department for the last 5 years, even though a bioinformatician, and the "…

Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…

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A: overlap GRangesList and vcf

A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

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Scholar to Mike Smith ★ 6.0k