Showing : yeast • reset
3
votes
4
replies
1.6k
views
ORF lengths using Yeast Annotation package
yeast genomicranges
9.6 years ago • updated 9.5 years ago dktarathym • 0
3
votes
3
replies
2.0k
views
Goseq and yeast
goseq yeast
9.2 years ago Marek Gierlinski ▴ 30
1
vote
2
replies
1.8k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
0
votes
2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
votes
0
replies
919
views
[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
Microarray Yeast genefilter affy Microarray Yeast genefilter affy
22.0 years ago Laurent Gautier ▴ 150
0
votes
0
replies
1.0k
views
(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO Yeast cdf genefilter affy PROcess GO Yeast cdf genefilter affy PROcess
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
replies
983
views
pb using affy // Anova with R
Microarray Yeast affy Microarray Yeast affy
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
replies
709
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.9 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
2
replies
929
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.9 years ago Laurent Gautier ★ 2.3k
0
votes
0
replies
844
views
yeast annotation?
Annotation Yeast Annotation Yeast
21.8 years ago Anthony Rossini ▴ 530
0
votes
1
reply
927
views
problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 21.3 years ago by ★ 2.3k • written 21.3 years ago by ▴ 10
0
votes
0
replies
649
views
affy memory size and Windows
Yeast affy Yeast affy
21.2 years ago Virginia Marks ▴ 10
0
votes
1
reply
752
views
Question about affy
Yeast affy Yeast affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
0
replies
877
views
Re: metaData
Annotation GO Yeast probe Annotation GO Yeast probe
20.3 years ago John Zhang ★ 2.9k
0
votes
0
replies
714
views
Problems with mas5calls for ygs98 chips
Yeast probe Yeast probe
18.2 years ago Jarno Tuimala ▴ 140
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
2
replies
816
views
affy package and segmentation error
Yeast Yeast
updated 19.5 years ago by ▴ 950 • written 19.5 years ago by ▴ 40
0
votes
0
replies
601
views
cdf environment for Yeast 2.0 array
Yeast cdf affy Yeast cdf affy
19.4 years ago Jakub Orzechowski Westholm ▴ 40
0
votes
3
replies
829
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
0
votes
5
replies
1.3k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 19.3 years ago by 6.7k • written 19.3 years ago by ▴ 320
0
votes
2
replies
1.1k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
0
votes
1
reply
1.0k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 100
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
votes
2
replies
999
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
1
reply
1.0k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 18.3 years ago by ▴ 60 • written 18.3 years ago by ▴ 30
0
votes
0
replies
743
views
Fwd: Re: Run GOHyperG without specifying a chip
Annotation Yeast Annotation Yeast
18.2 years ago Mikko Arvas ▴ 90
0
votes
1
reply
778
views
Unable to get expression-values from cel-files of yeast
Yeast cdf affy Yeast cdf affy
updated 18.2 years ago by 65k • written 18.2 years ago by ▴ 10
0
votes
2
replies
867
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 80
0
votes
0
replies
1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
votes
1
reply
799
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ▴ 320
0
votes
2
replies
888
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 100
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
1
reply
951
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 1.1k
0
votes
0
replies
971
views
Differentially Expressed Genes in Time Series with Replications
Yeast cycle Yeast cycle
17.3 years ago peter robinson ▴ 300
0
votes
0
replies
592
views
SemSim GOCount question
GO Yeast GO Yeast
17.1 years ago Ariel Chernomoretz ▴ 170
0
votes
0
replies
575
views
Question about Yeast Microarray
Yeast Yeast
17.0 years ago Ajit Kulkarni ▴ 10
0
votes
0
replies
728
views
Yeast Tiling Array BPMAP
Yeast Yeast
16.9 years ago iromashk@student.umass.edu ▴ 30
0
votes
3
replies
1.2k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
871
views
Microarray data with outliers
Yeast Yeast
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 70
0
votes
5
replies
1.5k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
10
replies
1.6k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
votes
0
replies
860
views
made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
16.5 years ago Aedin Culhane ▴ 510
0
votes
0
replies
1.8k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
16.5 years ago McGee, Monnie ▴ 300
0
votes
2
replies
1.1k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards • All
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.9k
Popular Question to siajunren • 0
Scholar to Rory Stark ★ 5.2k
Locations • All
WEHI, Melbourne, Australia, 2 minutes ago
France, 4 minutes ago
St Louis, MO, 35 minutes ago
United States, 1 hour ago
United States, 2 hours ago
Traffic: 619 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6