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Question on processing compound protein groups in limpa
limpa
3 days ago • updated 1 day ago
JKim
• 0
0
votes
1
reply
78
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Signature for msVIPER from paired bulk RNAseq data
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Correct usage of limpa for protein input
limpa
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News:
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Which preprocessing steps are needed before running limpa?
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updated 4 days ago by
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53k • written 10 days ago by
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Can sample-level weights be used when analysing GSVA scores in limma?
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Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
limpa
updated 9 days ago by
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53k • written 10 days ago by
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• 0
0
votes
1
reply
73
views
Testing subgroup-specific interactions in DEXSeq
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10 days ago • updated 6 days ago
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• 0
0
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77
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Job:
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359
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Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy names?
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1
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152
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Subsetting data verses contrasts [DESeq2]?
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Chip Seq Analysis of RNA Polymerase 2
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Limma-voom sample weights and impact on DEG numbers
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Job:
Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics (MSCA PF / EMBO)
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updated 16 days ago by
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358
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295
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msmsTests, inconsistent sign between lFC.Av and LogFC
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46,776 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
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