2
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3
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874
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DESeq2 - Plot Nr. Genes vs Variance explained in PCA
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updated 21 months ago by 43k • written 21 months ago by ▴ 20
0
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updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
0
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1
reply
777
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Visium RNA
metaMSdata
written 21 months ago by • 0
1
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2
replies
1.4k
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Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
0
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0
replies
437
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DNAcopy segment function not reproducible even when setting seed
DNAcopy
21 months ago BID • 0
0
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2
replies
1.1k
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Non-empty droplets versus good quality cells
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21 months ago rocanja ▴ 60
3
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3
replies
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
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updated 21 months ago by ▴ 200 • written 8.2 years ago by ▴ 100
0
votes
2
replies
3.6k
views
Error in msaFun Cannot open input file. No alignment!
msa
written 21 months ago by ▴ 30
2
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3
replies
1.1k
views
edgeR, 3 x 2 design with a batch effect and contrasts
design edgeR contrasts
updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
1
reply
755
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 21 months ago by ★ 4.1k • written 21 months ago by • 0
4
votes
3
replies
1.3k
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Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 21 months ago by • 0
2
votes
2
replies
1.8k
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
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21 months ago Eva ▴ 10
0
votes
4
replies
1.1k
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Unable to annotate ExpressionSet object from hugene11st chip
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21 months ago Efra • 0
1
vote
1
reply
729
views
Need help with creating and plotting temporal clustering analysis of DEGs
DESeq2 ctsGE
updated 21 months ago by 43k • written 21 months ago by • 0
0
votes
1
reply
458
views
Help with DESeqDataSetFromHTSeqCount
DESeq2 RSeqAn
updated 21 months ago by 43k • written 21 months ago by • 0
0
votes
1
reply
1.6k
views
lfcShrink error: the line search routine failed
apeglm DESeq2
updated 21 months ago by 43k • written 21 months ago by • 0
3
votes
9
replies
8.4k
views
enrichGOgradient color change
clusterProfiler
updated 12 months ago by • 0 • written 2.1 years ago by • 0
1
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5
replies
1.4k
views
Biostrings: read*StringSet() functions leave open file handles
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22 months ago • updated 21 months ago Gerhard Thallinger ▴ 180
5
votes
7
replies
1.6k
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DEG Filtering
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updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
2
replies
902
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RNAseq analysis
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updated 21 months ago by 53k • written 21 months ago by • 0
1
vote
1
reply
1.5k
views
Perfoming clumping using ieugwasr package
LinkageDisequilibrium genom linka GenomicDistributionsData
updated 21 months ago by 68k • written 21 months ago by ▴ 10
2
votes
2
replies
806
views
With DESeq2 "Not full rank" Error with design
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21 months ago feather-W • 0
0
votes
1
reply
716
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 21 months ago by 53k • written 21 months ago by ▴ 180
2
votes
2
replies
987
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between lane normalization upper quantile
EDASeq edgeR
21 months ago elesofi • 0
2
votes
3
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Fail BiocManager::install(version='3.12')
BioManager
updated 21 months ago by ★ 5.0k • written 3.7 years ago by ▴ 20
0
votes
1
reply
715
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problem with ClusterRepro function
WGCNA
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
2
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views
Missing Band on Volcano Plot from DESeq2
DESeq2 Visualization DifferentialExpression
updated 21 months ago by 43k • written 21 months ago by • 0
0
votes
4
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904
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DESeq2: subtract effect of an isotope control before comparing to a baseline sample?
DESeq2
updated 21 months ago by 43k • written 21 months ago by • 0
2
votes
2
replies
886
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Question about extracting co-efficients for pairwise comparisons in edgeR
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21 months ago Sabiha ▴ 20
0
votes
10
replies
1.8k
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DESeq2 filtering vs edgeR filtering
DESeq2
written 21 months ago by • 0
0
votes
2
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954
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Scores used for DiffBind's dba.plotHeatmap
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22 months ago • updated 21 months ago Sam ▴ 10
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2
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RNA sequencing raw counts gene filtering
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21 months ago kcarey • 0
1
vote
1
reply
609
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i'm not getting any differentially expressed genes.
DESeq2
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
2
votes
1
reply
844
views
Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperiment object
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updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
0
votes
1
reply
805
views
Exact same results in Diffbind with different normalization methods
DiffBind
22 months ago • updated 21 months ago red_bricks ▴ 60
0
votes
0
replies
589
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FELLA plotGraph function won't change the legend
FELLA
22 months ago yuhang • 0
0
votes
0
replies
497
views
medips-output
ngsReports MEDIPS
22 months ago Researcher ▴ 10
1
vote
1
reply
799
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Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas db0
updated 10 weeks ago by • 0 • written 22 months ago by ▴ 10
0
votes
1
reply
624
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 22 months ago by ▴ 40 • written 23 months ago by • 0
0
votes
1
reply
710
views
question about data processing for syntenet
syntenet
updated 22 months ago by ▴ 40 • written 24 months ago by • 0
0
votes
4
replies
804
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Error in classify_gene_pairs
syntenet doubletrouble
22 months ago hfyuan2016 • 0
2
votes
1
reply
768
views
Is random access by row index possible for an indexed VCF file?
Rsamtools VariantAnnotation
updated 22 months ago by 68k • written 22 months ago by ▴ 180
0
votes
0
replies
430
views
The graphical interface of FELLA doesn't work
FELLA
22 months ago yuhang • 0
0
votes
0
replies
510
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DEXSeq plot error
DEXSeq DEXSeqNAvalues DEXseq
22 months ago jean-christophe.helbling • 0
1
vote
1
reply
537
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Perform PCA for sample clustering using DESeq2
DESeq2
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
1
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3
replies
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Cross-species analysis - how to compute the mid parent value?
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written 23 months ago by • 0
0
votes
2
replies
984
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DESeq2: Comparing A Knockout to a Strain
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22 months ago Viktor Thiel • 0
0
votes
0
replies
684
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To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
22 months ago Henry • 0
0
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1
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1.2k
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Rcpp compilation error
Release Rcpp
updated 22 months ago by ★ 5.0k • written 22 months ago by ▴ 40
0
votes
1
reply
822
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Rain error: invalid annotation of time points
rain
updated 11 months ago by • 0 • written 22 months ago by • 0
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