0
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0
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467
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IlluminaHumanMethylation27kanno.ilmn12.hg19 package is mapped to hg18 genome
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written 23 months ago by 4.2k
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3
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Big differences between biological replicates makes DESeq2 result 0
chipseq DifferentialMethylation DESeq2
updated 23 months ago by 43k • written 23 months ago by • 0
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3
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1.4k
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Comparing relative expression of a conserved gene between distantly related species.
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written 23 months ago by • 0
4
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When should I correct for batch effects
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0
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2
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Regressing out covariates from expression matrix for PCA visualization - can I use coefficients calculated in DESeq2??
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23 months ago tombate94 • 0
1
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8
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edgeR error "Design matrix not of full rank"
edgeR methylation
updated 23 months ago by 53k • written 23 months ago by • 0
0
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1
reply
1.1k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
23 months ago isaromero8888 • 0
0
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1
reply
1.5k
views
ClusterProfiler result question: Why are all many of my resulting p.adjust values the same???
clusterProfiler
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
0
replies
768
views
News: 2024 May Institute on computation and statistics for mass spectrometry and proteomics
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23 months ago kohler.d • 0
0
votes
3
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1.0k
views
Interaction tests and paired interaction tests in swish
swish salmon fishpond
updated 23 months ago by 43k • written 23 months ago by • 0
0
votes
1
reply
688
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Error in GDCRNATools
ceRNA GDCRNATools RNASeq
updated 23 months ago by ▴ 220 • written 23 months ago by • 0
0
votes
1
reply
989
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visualizing GSEA showCategory question
enrichplot
updated 23 months ago by 68k • written 23 months ago by • 0
0
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1
reply
1.2k
views
WGCNA Soft Power
Normalization DESeq2 Network RNASeqData
updated 23 months ago by ★ 5.0k • written 23 months ago by • 0
0
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2
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944
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TCGA-GBM subtype tumor
curatedTCGAData
updated 23 months ago by 700 • written 23 months ago by • 0
0
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0
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619
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clusterSweep Warning k Capped
bluster
23 months ago Dario Strbenac ★ 1.6k
0
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1
reply
745
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Dimensionality reduction visualization
imcRtools SingleCellData imcdatasets SpatialWorkflow
updated 23 months ago by 68k • written 23 months ago by • 0
1
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2
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1.2k
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Problems with Feature counting
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23 months ago mirjanakessler • 0
0
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0
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968
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Which normalization should I do use for ATAC Seq using DiffBind
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23 months ago Jawahar • 0
2
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4
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Does EdgeR trimmed mean of M values (TMM) account for gene length?
Normalization edgeR RNASeq
23 months ago Sabiha ▴ 20
0
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2
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863
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Which fasta files to use for tximeta makeLinkTxome
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23 months ago JING • 0
5
votes
6
replies
1.6k
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23 months ago Shaimaa Gamal • 0
0
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1
reply
547
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DESEQ2 reduced model input into Pathfindr
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updated 23 months ago by 43k • written 23 months ago by • 0
0
votes
1
reply
790
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Behavior of most genes in Ribosome-footprints dataset deviates from expected
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updated 23 months ago by 43k • written 23 months ago by • 0
2
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DESeq2
updated 23 months ago by 43k • written 23 months ago by ▴ 10
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23 months ago mp52226 • 0
0
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1
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892
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Running Deseq2 with all samples vs samples for each comparison separately
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updated 23 months ago by 43k • written 23 months ago by • 0
4
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6
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23 months ago Dario Strbenac ★ 1.6k
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EdgeR for methylation analysis when there is no replicates
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updated 23 months ago by 53k • written 23 months ago by • 0
0
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0
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546
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Biostrings
23 months ago Angela Michalichyn • 0
0
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0
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553
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rpk per cell saved in SCE object.
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23 months ago JalapenoCornbread • 0
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23 months ago frueher • 0
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3
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EdgeR: Should I include all samples/conditions in my dispersion estimation while only testing for certain contrasts
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updated 23 months ago by 53k • written 23 months ago by • 0
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Problem installing package, version of dependency issue
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updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 50
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619
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[DESEQ2] When to average biological replicates for hierarchical clustering
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updated 23 months ago by 68k • written 23 months ago by • 0
2
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2
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636
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How to interpret log2fold values when using numeric contrasts in DESEQ2?
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23 months ago pl23 • 0
1
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1
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2.2k
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Error with biomaRt
biomaRt
updated 23 months ago by ★ 6.6k • written 23 months ago by • 0
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2
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updated 23 months ago by 16k • written 23 months ago by ▴ 30
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updated 23 months ago by ★ 4.1k • written 23 months ago by • 0
1
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3
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903
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makeOrgPackageFromNCBI generates an empty database?
OrganismDbi makeOrgPackageFromNCBI
updated 23 months ago by 68k • written 23 months ago by • 0
2
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2
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1.6k
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biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
23 months ago bd2000 ▴ 30
0
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4
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2.8k
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Bioconductor installation
Bioconductor
written 24 months ago by • 0
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3
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1.5k
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scran package: quickCluster and calculateSumFactors parallelization
BiocParallel scran
updated 23 months ago by ★ 5.0k • written 24 months ago by • 0
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Cannot use findOverlaps with 2 GInteractions objects with different ranges.
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24 months ago • updated 23 months ago Sarah ▴ 10
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 23 months ago by 53k • written 23 months ago by • 0
0
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0
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RFC: significant changes to ensemblVEP package
VariantAnnotation ensemblVEP
23 months ago Vincent J. Carey, Jr. 6.7k
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936
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Dataset imbalance
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updated 23 months ago by 53k • written 24 months ago by • 0
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0
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571
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Errror in running EdgeR based differential analysis in diffbind
DiffBind
24 months ago Aswathy • 0
1
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1
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704
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updated 24 months ago by 68k • written 24 months ago by • 0
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