I am currently attempting to assemble and annotate various regions of unstranded RNA-seq data obtained from paired-end sequencing. I am currently using StringTie for assembly and have come across the option of incorporating the IsoformSwitchAnalyzeR package with the output from StringTie for 3' UTR annotation. I would like to know if I can analyze the assembly results using the IsoformSwitchAnaly…
updated 9 weeks ago • Henry