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757
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error in runBioHMM() (package snapCGH)
CGH
snapCGH
CGH
snapCGH
15.0 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
0
replies
1.3k
views
EnrichGO
R
enrichplot
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
Neha
• 0
0
votes
1
reply
199
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 4 weeks ago by
Guido Hooiveld
★ 4.0k • written 5 weeks ago by
Lucie
• 0
0
votes
0
replies
734
views
Data Normalization for Exiqon
13.7 years ago
ashwin Vishnuvardhana
▴ 50
0
votes
0
replies
928
views
SAM for protemics - low q values
safe
safe
10.7 years ago
Hendrik Nolte
▴ 10
0
votes
0
replies
622
views
parseWorkspace data that hasn't been gated
bioconductor
6.9 years ago
justinyi10
▴ 10
0
votes
0
replies
796
views
how to simulate the microarray data set?
13.4 years ago
Xiaowei Guan
▴ 90
0
votes
0
replies
612
views
Deadline for submitting a package for BioC 2.7
Cancer
Cancer
13.7 years ago
Hervé Pagès
16k
0
votes
0
replies
578
views
Summary: Combining HGU133A & HGU133B data
20.7 years ago
Adaikalavan RAMASAMY
▴ 80
0
votes
0
replies
556
views
limma_1.8.21 was: LIMMA - timecourse and direct comparison exp. design
limma
limma
19.2 years ago
Pita
▴ 120
0
votes
0
replies
1.2k
views
Experimental Design Question(s)
Microarray
limma
Microarray
limma
15.6 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
0
votes
0
replies
667
views
Sources of information about amplified genes in cancer
Cancer
Cancer
13.7 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.1k
views
building an annotation library from scratch
miRNA
Annotation
db0
AnnotationDbi
miRNA
Annotation
db0
AnnotationDbi
14.6 years ago
Guido Hooiveld
★ 4.0k
0
votes
1
reply
1.1k
views
Calulation of ka/ks (dn/ds) using sliding windows
evolutionary analysis
6.6 years ago
emiliomastriani
• 0
0
votes
0
replies
956
views
Starr package: cmarrt.ma error
Starr
Starr
10.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
606
views
Package Icens_1.16.0.tar.gz has been built for Windows
14.6 years ago
Uwe.Ligges@r-project.org
▴ 120
0
votes
0
replies
616
views
Upcoming changes to the Bioconductor website
PROcess
PROcess
19.3 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
911
views
NAs introduced by marrayNorm after background subtraction with Limma
Normalization
probe
limma
marray
Normalization
probe
limma
marray
11.1 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Bumphunter Algorithm Returns Regions with very few CpGs
bumphunter
minfi
7.6 years ago
graggsd
• 0
0
votes
0
replies
603
views
Student Intern Position, Summer 2007, Chicago, IL
Cancer
Cancer
17.2 years ago
Simon Lin
▴ 270
0
votes
0
replies
757
views
Need help in Anova design (contrast.tratment)
limma
limma
13.6 years ago
ashwin Vishnuvardhana
▴ 50
0
votes
0
replies
833
views
Pairwise Function Output
probe
probe
13.6 years ago
Lakshmi Kastury
▴ 40
0
votes
0
replies
906
views
Votre forfait mobile vous coûte trop cher
15.5 years ago
Laure de Meilleurmobile
▴ 90
0
votes
0
replies
726
views
Problems with the package makecdfenv
cdf
affy
cdf
affy
21.2 years ago
Tobias Mueller
▴ 10
0
votes
0
replies
593
views
expression values
GO
GO
21.0 years ago
Ben Bolstad
★ 1.1k
0
votes
0
replies
664
views
kooperberg syntax fix
Annotation
Annotation
18.7 years ago
scholz@Ag.arizona.edu
▴ 130
0
votes
0
replies
3.4k
views
Retrieving genes by their genome locations in biomart
biomaRt
biomaRt
16.1 years ago
Steffen
▴ 500
0
votes
0
replies
630
views
what is the best way to correlate SFP data to a phylogenetic correlation?
17.1 years ago
Betty Gilbert
▴ 50
0
votes
3
replies
969
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST
ROntoTools
KEGG
KEGGgraph
21 months ago
abf
▴ 30
0
votes
0
replies
409
views
Error while performing DEXseq
DEXSeq
11 months ago
vipul14
• 0
0
votes
0
replies
975
views
Ensembl mart release 53: Useful information for BiomaRt users
Annotation
Annotation
15.2 years ago
Rhoda Kinsella
▴ 660
0
votes
0
replies
2.0k
views
ComBat: 2 adjustment variables & continuous adjustment variables
GO
Category
sva
GO
Category
sva
10.2 years ago
W. Evan Johnson
▴ 850
0
votes
0
replies
923
views
ABarray
ABarray
ABarray
16.6 years ago
Sabah Khalid
▴ 10
0
votes
0
replies
814
views
Mailing Lists: Timeout today GMT 18--19.30
19.9 years ago
Martin Maechler
▴ 330
0
votes
0
replies
817
views
Microarray t-test and ANOVA
limma
limma
20.8 years ago
michael watson IAH-C
★ 3.4k
0
votes
0
replies
1.1k
views
geneplotter - buildChromLoc for arrays with no .db
GO
geneplotter
GO
geneplotter
11.4 years ago
Lavinia Gordon
▴ 480
0
votes
0
replies
1.5k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.1 years ago
Radek Blatny
▴ 60
0
votes
0
replies
247
views
normalizeWithinArrays error
16.1 years ago
Uthandaraman Mahalingaraja
▴ 10
0
votes
4
replies
2.7k
views
pathview: Warning: Download of hsa04110 xml and png files failed!
pathview
5.9 years ago
masamiwata
• 0
0
votes
2
replies
732
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
19 months ago
michela
▴ 20
0
votes
0
replies
803
views
Ensembl mart release 60: Useful information
13.5 years ago
Rhoda Kinsella
▴ 660
0
votes
1
reply
995
views
Dotplot from enricher outputting very few genes
clusterProfiler
enrichplot
updated 23 months ago by
Guido Hooiveld
★ 4.0k • written 23 months ago by
Lucía
▴ 10
0
votes
0
replies
670
views
Calculating microarray ratios between channels from different arrays
19.7 years ago
michael watson IAH-C
★ 3.4k
0
votes
0
replies
583
views
queries reg hub genes
normalization
limma
microarray
annotation
7.0 years ago
krithi11987
• 0
0
votes
0
replies
653
views
Re: Bioconductor Digest, Vol 12, Issue 10
20.3 years ago
Tarca Adi Laurentiu
▴ 100
0
votes
0
replies
825
views
extract genes from vennDiagram LIMMA ..How?,
limma
limma
19.2 years ago
SAURIN
★ 1.1k
0
votes
0
replies
649
views
Fwd: Re: edgeR and sagenhaft
SAGE
GO
edgeR
SAGE
GO
edgeR
15.3 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
704
views
normalization
Normalization
Normalization
19.2 years ago
Paul Mack
▴ 30
0
votes
0
replies
825
views
affy 2.0 (fwd)
cdf
probe
affy
cdf
probe
affy
21.8 years ago
Jeff Gentry
★ 3.9k
0
votes
0
replies
690
views
Re: [R] How to collect trees grown by rpart
20.2 years ago
Sean Davis
21k
1,000 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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