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readTranscriptFeatures R genomation bed

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by sat • 0

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rtracklayer R bed

updated 15 months ago by Walters • 0 • written 21 months ago by L ▴ 50

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bed bigBed rtracklayer ucsc

17 months ago L ▴ 50

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mappability bed python

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by the • 0

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rtracklayer bed

updated 3.2 years ago by merv ▴ 120 • written 8.1 years ago by Ryan C. Thompson ★ 7.9k

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rtracklayer bed genomicranges

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by foehn ▴ 100

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sushi bed

5.6 years ago maltethodberg ▴ 170

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bed vcf

updated 5.8 years ago by GENOMIC_region • 0 • written 5.8 years ago by Bogdan ▴ 670

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granges bed genomicranges genomeintervals deseq2

6.3 years ago rbronste ▴ 60

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rtracklayer bed software error

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Ryan C. Thompson ★ 7.9k

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coverage bed

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by sgupt46 • 0

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annotationhub bugs encode bed

7.4 years ago wcstcyx ▴ 30

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rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

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gviz BED Ucsc UcscTrack

8.3 years ago Andy91 ▴ 60

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rtracklayer NA BED getseq

8.4 years ago Dimitris Polychronopoulos ▴ 80

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readvcf plink file conversion bed bioc-devel

9.1 years ago mjsduncan • 0

16 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0