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limma with interaction term
R biostatistics limma Epigenetics
11 weeks ago • updated 9 weeks ago Jitendra ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
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13
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DESeq2 and betaPrior
deseq2 biostatistics
6.7 years ago • updated 6.6 years ago Elena Grassi ▴ 10
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.1 years ago g.atla ▴ 10
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Job: PhD Positions in Computational Cancer Research
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8.0 years ago Bernd Fischer ▴ 550
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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7.9 years ago • updated 7.8 years ago Frank Kramer ▴ 60
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Job: (Bio-)Statistician at dkfz, Heidelberg, Germany
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
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7.0 years ago hong.lee • 0
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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6.3 years ago Federico Marini ▴ 150
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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6.1 years ago xzhousph • 0
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.0 years ago Fred Hutch (Recruiting) ▴ 40
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Job: PhD and PostDoc position in computational cancer biology in Milan
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5.5 years ago marschaefer • 0
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Job: Biostatistics Scientist II - high throughput single-cell assays
Biostatistics Job
5.2 years ago careers • 0
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Job: Biostatistics Analyst II - high throughput single-cell assays
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.1 years ago Patrick Kimes ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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4.5 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
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4.2 years ago Tommi Suvitaival ▴ 10
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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4.2 years ago Patrick Kimes ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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2.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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2.1 years ago helene.ruffieux • 0
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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23 months ago helene.ruffieux • 0
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Job: Postdoctoral positions in drug discovery and genome data science
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5.2 years ago Thomas Girke ★ 1.7k
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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4.8 years ago Michael Prummer • 0
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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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