Showing : Beadarray • reset
1
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2
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7.2k
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LIMMA - summarization of Illumina probes for same gene
probe affy limma beadarray probe affy limma beadarray
updated 12.1 years ago by ▴ 180 • written 12.1 years ago by 50k
3
votes
12
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6.2k
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packages installation problem
limma Rqc beadarray Lumi
updated 8.2 years ago by ▴ 70 • written 8.2 years ago by • 0
3
votes
9
replies
5.6k
views
Illumina Expression analysis from iDAT files
beadarray lumi illuminaio idat
updated 2.4 years ago by 50k • written 10.4 years ago by 21k
0
votes
1
reply
3.9k
views
Problem installing packages on new R
limma beadarray lumi arrayMvout limma beadarray lumi arrayMvout
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 10
0
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1
reply
2.7k
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Normalization of Illumina Array with separate bgx-file
Annotation limma beadarray bgx Annotation limma beadarray bgx
updated 10.2 years ago by 50k • written 10.2 years ago by ▴ 10
0
votes
3
replies
2.6k
views
Problem with reading raw Illumina Human HT-12 v4 data using beadarray
beadarray readIllumina
9.2 years ago jaro.slamecka ▴ 140
1
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3
replies
2.4k
views
Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.8 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
0
votes
0
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2.4k
views
lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
lumi illumina normalization beadarray
7.0 years ago hkarakurt ▴ 20
0
votes
4
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2.3k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 270
0
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7
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2.2k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 7.7 years ago by • 0 • written 14.0 years ago by ★ 1.6k
0
votes
6
replies
2.2k
views
Illumina bead arrays
beadarray beadarray
updated 16.7 years ago by ▴ 40 • written 16.7 years ago by ▴ 110
0
votes
6
replies
2.2k
views
Illumina bead array analysis
illumina beadarray
updated 14 months ago by ★ 1.1k • written 9.6 years ago by • 0
4
votes
10
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2.2k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio idat beadarray
updated 8.6 years ago by ★ 6.5k • written 8.6 years ago by ▴ 30
0
votes
14
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2.0k
views
reading data from Beadarray into R
beadarray beadarray
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 120
0
votes
1
reply
2.0k
views
hoeffd function (CRAN HMisc package) use in arrayQualityMetrics
beadarray beadarray
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ★ 13k
0
votes
2
replies
2.0k
views
Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 8.2 years ago by • 0 • written 12.4 years ago by ▴ 350
0
votes
9
replies
1.9k
views
problems with readIllumina() for many BeadChips
beadarray beadarray
updated 13.2 years ago by ★ 6.5k • written 13.2 years ago by ▴ 620
0
votes
9
replies
1.9k
views
beadarray - combining swath files
PROcess beadarray PROcess beadarray
updated 10.9 years ago by ★ 1.1k • written 10.9 years ago by ▴ 70
0
votes
11
replies
1.8k
views
Illumina beadlevel expression data
beadarray beadarray
updated 16.5 years ago by ▴ 460 • written 16.5 years ago by ▴ 110
0
votes
2
replies
1.8k
views
Reading IDAT files from Illumina HumanMethylation450 BeadChip with beadarray
beadarray illumina methylation microarray
updated 8.6 years ago by 21k • written 8.6 years ago by • 0
0
votes
5
replies
1.8k
views
Probe summerization of Human HT-12 V4 BeadChip arrays
beadarray bead chip illuminahumanv4.db normalization RMA
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi
10.4 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.7k
views
Any alternative to GenomeStudio to analyze Illumina VeraCode arrays? Is Beadarray an option?
microarray beadarray Illumina Veracode
9.3 years ago lacion • 0
0
votes
4
replies
1.7k
views
beadarray: readIllumina with sample sheet broken due to Illumina switching to 12 digit chip identifiers
beadarray bug illumina human ht-12 v4 illumina beadchip
updated 7.0 years ago by ★ 1.1k • written 7.0 years ago by • 0
0
votes
7
replies
1.7k
views
Illumina BeadChips and beadarray
beadarray beadarray
updated 15.7 years ago by ▴ 460 • written 15.7 years ago by ▴ 620
0
votes
3
replies
1.7k
views
sampleSheet problem in beadArray
beadarray beadarray
updated 9.7 years ago by 65k • written 9.7 years ago by ★ 13k
0
votes
7
replies
1.6k
views
getting error in processSwathData command from the beadarray package
microarray beadarray illumina
updated 9.1 years ago by ★ 6.5k • written 9.1 years ago by • 0
0
votes
8
replies
1.6k
views
illumina --> limma?
GO limma beadarray BeadExplorer GO limma beadarray BeadExplorer
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 60
0
votes
1
reply
1.6k
views
paired microarray samples
Regression limma beadarray Regression limma beadarray
updated 14.5 years ago by ★ 6.0k • written 14.5 years ago by ▴ 60
0
votes
5
replies
1.5k
views
Newbie Illumina Probe Annotation (beadarray) Problem
Annotation probe PROcess beadarray Annotation probe PROcess beadarray
updated 15.3 years ago by ▴ 40 • written 15.3 years ago by ▴ 10
0
votes
3
replies
1.5k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 270
0
votes
3
replies
1.5k
views
unable to set sampleNames after combine (from beadarray package) on ExpressionSetIllumina
beadarray
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 220
0
votes
5
replies
1.5k
views
info su illumina
beadarray beadarray
updated 18.2 years ago by ▴ 320 • written 18.2 years ago by ▴ 250
1
vote
2
replies
1.5k
views
Problems compiling lumi on Solaris Sparc and R 2.9.0
beadarray lumi beadarray lumi
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 20
0
votes
7
replies
1.5k
views
Beadarray readBeadSummaryData() problem
beadarray beadarray
updated 15.9 years ago by ▴ 10 • written 15.9 years ago by ▴ 640
0
votes
3
replies
1.5k
views
beadarray package question
Annotation beadarray Annotation beadarray
updated 15.4 years ago by ▴ 50 • written 15.5 years ago by ▴ 30
0
votes
4
replies
1.5k
views
About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 16.3 years ago by ▴ 410 • written 16.3 years ago by ▴ 150
0
votes
1
reply
1.5k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 17.2 years ago by ▴ 320 • written 17.2 years ago by ▴ 70
0
votes
2
replies
1.5k
views
crlmm problem
SNP beadarray crlmm SNP beadarray crlmm
10.2 years ago Aaerp ▴ 40
0
votes
6
replies
1.4k
views
Illumina Beadarray negative data
beadarray lumi beadarray lumi
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 640
1
vote
2
replies
1.4k
views
readIllumina couln't read bead-level txt file from GEO raw data
beadarray bead-level GEO lumi
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by • 0
0
votes
0
replies
1.4k
views
using beadarray to process iscan expression data - error using readIllumina()
PROcess beadarray PROcess beadarray
10.9 years ago Darren Plant ▴ 70
0
votes
4
replies
1.4k
views
Beadarray expression data
affy beadarray affy beadarray
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 110
0
votes
3
replies
1.4k
views
beadarray illumina Human610-Quadv1_B.bpm
SNP Annotation illuminaHumanv1 beadarray SNP Annotation illuminaHumanv1 beadarray
updated 14.0 years ago by ★ 1.1k • written 14.0 years ago by ▴ 80
0
votes
1
reply
1.4k
views
About beadarray Quality Assessment and Detection P value
beadarray beadarray
updated 15.2 years ago by ▴ 50 • written 15.2 years ago by ▴ 640
0
votes
1
reply
1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 410
0
votes
0
replies
1.3k
views
Beadarray error: comparison of types not implemented
Annotation ExperimentData beadarray Annotation ExperimentData beadarray
15.1 years ago Anne-Kristin Stavrum ▴ 10
0
votes
1
reply
1.3k
views
Problems in using lumi for importing illumina raw data
beadarray lumi normalization microarray illumina
updated 7.3 years ago by 50k • written 7.4 years ago by ▴ 110
0
votes
6
replies
1.3k
views
summarized expression values from beadarray versus GenomeStudio
Normalization beadarray Normalization beadarray
updated 13.1 years ago by ★ 1.1k • written 13.1 years ago by ▴ 620
0
votes
1
reply
1.3k
views
subscript out of bounds error when following new beadarray tutorial
beadarray beadarray
updated 13.5 years ago by ★ 1.1k • written 13.5 years ago by ▴ 100
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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