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BiocCheck
•
reset
7
votes
2
replies
1.2k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.6 years ago by
ZheFrench
▴ 50
5
votes
2
replies
935
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.4 years ago by
Steve Lianoglou
★ 13k • written 2.4 years ago by
pouryany
• 0
0
votes
2
replies
921
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.0 years ago • updated 2.9 years ago
ullrich
▴ 20
0
votes
2
replies
705
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
wewolski
▴ 10
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
0
votes
1
reply
847
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
zhezhenwang
• 0
1
vote
2
replies
1.9k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.7 years ago
j.flesch
▴ 10
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.9 years ago
waterincan
• 0
0
votes
2
replies
904
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.8 years ago by
shepherl
3.8k • written 5.8 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.8 years ago by
Marcel Ramos
690 • written 8.0 years ago by
richierocks
▴ 40
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.5 years ago
Paul Brennan
▴ 10
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck
bug
7.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
875
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
ihnatova
• 0
2
votes
10
replies
2.4k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 19 months ago by
Marek Gierlinski
▴ 30 • written 7.5 years ago by
david.a.quigley
• 0
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.0 years ago
kmezhoud
▴ 10
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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