Showing : BiocInstaller • reset
2
votes
2
replies
5.0k
views
Help with installing biocLite.R
biocLite biocinstaller
10.5 years ago thomas.mohr ▴ 20
1
vote
9
replies
3.2k
views
errors in namespaceExports during biocLite installs
biocinstaller installation
10.5 years ago shabbychef • 0
3
votes
3
replies
4.4k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller installation TxDb
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by 1.6k
3
votes
2
replies
3.6k
views
Cannot install GenomicFeatures package (related to RSQLite version)
biocinstaller genomicfeatures rsqlite
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by • 0
6
votes
2
replies
2.2k
views
BiocUpgrade without being promped to confirm
bioclite biocinstaller biocupgrade
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 50
0
votes
1
reply
1.6k
views
rsqlite for windows from fhcrc
Transcription BiocInstaller Transcription BiocInstaller
updated 11.2 years ago by 25k • written 11.2 years ago by ★ 6.5k
0
votes
4
replies
2.2k
views
Problem in installing Rgraphviz
Rgraphviz BiocInstaller Rgraphviz BiocInstaller
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.6k
views
problem installing GenomicFeatures
GenomicFeatures BiocInstaller GenomicFeatures BiocInstaller
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ★ 13k
0
votes
3
replies
2.7k
views
BiocInstaller on R-devel
BiocInstaller BiocInstaller
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 6.5k
0
votes
3
replies
2.6k
views
bioc package installation problem
ShortRead BiocInstaller ShortRead BiocInstaller
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 680
0
votes
2
replies
3.0k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 40
1
vote
0
replies
1.4k
views
Error when installing globaltest package
BiocInstaller BiocInstaller
12.6 years ago Shields, Rusty IMS ▴ 40
0
votes
2
replies
2.0k
views
installing Rdisop
Rdisop BiocInstaller Rdisop BiocInstaller
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ★ 13k
0
votes
0
replies
844
views
Error in .testGOFra� me(x, organism)
GO BiocInstaller GO BiocInstaller
12.6 years ago Guest User ★ 13k
0
votes
1
reply
1.9k
views
cummeRbund
BiocInstaller cummeRbund Gviz BiocInstaller cummeRbund Gviz
updated 12.6 years ago by ▴ 210 • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.7k
views
[devteam-bioc] Rsamtools installation error
Rsamtools BiocInstaller Rsamtools BiocInstaller
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ★ 8.2k
0
votes
0
replies
1.5k
views
Rsamtools installation error
Rsamtools BiocInstaller Rsamtools BiocInstaller
12.7 years ago Guest User ★ 13k
0
votes
0
replies
1.0k
views
Error installing iFlow (Jaques Fattaccioli)
Cancer iFlow BiocInstaller Cancer iFlow BiocInstaller
12.8 years ago Finak, Greg ▴ 40
0
votes
2
replies
1.2k
views
Error installing iFlow
iFlow BiocInstaller iFlow BiocInstaller
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
RGalaxy not working with R 2.14.1?
BiocInstaller RGalaxy BiocInstaller RGalaxy
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ▴ 10
0
votes
2
replies
22k
views
Upgrading Bioconductor using BiocUpgrade
BiocInstaller BiocInstaller
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ▴ 480
0
votes
4
replies
2.3k
views
package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel
Annotation cdf BiocInstaller Annotation cdf BiocInstaller
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 290
0
votes
4
replies
2.9k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
13.2 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
1.6k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 13.2 years ago by ★ 8.2k • written 13.2 years ago by ▴ 30
0
votes
3
replies
3.8k
views
Installation of XCMS / mzR failed
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 20
0
votes
2
replies
3.9k
views
Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
BiocInstaller BiocInstaller
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 950
0
votes
1
reply
2.5k
views
EBImage installation problem on Linux
EBImage BiocInstaller EBImage BiocInstaller
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ★ 13k
0
votes
1
reply
1.2k
views
DESeq installation problems
DESeq BiocInstaller DESeq BiocInstaller
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
goseq installation - BiasedUrn is not available
BiocInstaller BiocInstaller
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 70
0
votes
0
replies
1.3k
views
Errors Installing Package qrqc under MacOsX
qrqc BiocInstaller qrqc BiocInstaller
13.4 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
1.3k
views
Errors Installing Package qrqc under MacOsX
qrqc BiocInstaller qrqc BiocInstaller
13.4 years ago Sue Jones ▴ 10
0
votes
12
replies
2.7k
views
MacOS Package installation problems
BiocInstaller BiocInstaller
updated 13.4 years ago by ▴ 10 • written 13.4 years ago by ▴ 80
0
votes
3
replies
1.6k
views
useDevel() not working
BiocInstaller BiocInstaller
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 420
0
votes
6
replies
2.7k
views
error installing Rgraphviz
Rgraphviz PROcess BiocInstaller Rgraphviz PROcess BiocInstaller
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 10
0
votes
4
replies
3.3k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ★ 13k
0
votes
9
replies
3.1k
views
ggbio: error when updating to current release version
BiocInstaller ggbio BiocInstaller ggbio
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 80
0
votes
1
reply
1.7k
views
geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 50
1
vote
1
reply
6.7k
views
edgeR usage
edgeR BiocInstaller edgeR BiocInstaller
updated 13.5 years ago by 68k • written 13.5 years ago by ★ 13k
0
votes
7
replies
2.2k
views
Install error affxparser for R 2.15
PROcess affxparser BiocInstaller PROcess affxparser BiocInstaller
updated 13.5 years ago by ★ 8.2k • written 13.5 years ago by ▴ 60
0
votes
2
replies
2.4k
views
Help - Rgraphviz install error for R 2.15 on Ubuntu 11.10
BiocInstaller BiocInstaller
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ▴ 120
0
votes
1
reply
1.6k
views
Is the qrqc package source updated?
qrqc BiocInstaller qrqc BiocInstaller
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Installation errors for DESeq, Genomic Ranges etc.
rtracklayer DESeq GenomicRanges BiocInstaller rtracklayer DESeq GenomicRanges BiocInstaller
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 220
0
votes
2
replies
6.7k
views
impute package
impute BiocInstaller impute BiocInstaller
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Installing GenomicRanges require a version of IRanges unavailable
IRanges BiocInstaller IRanges BiocInstaller
13.7 years ago Duhaime Johanne ▴ 100
0
votes
3
replies
2.5k
views
Rsubread installation failed.
Rsubread BiocInstaller
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 230
0
votes
2
replies
1.1k
views
Updating
BiocInstaller BiocInstaller
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 20
0
votes
4
replies
2.9k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 70
0
votes
1
reply
1.2k
views
help
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ★ 13k
0
votes
2
replies
1.3k
views
can't downlaod package "beadarrayExampleData"
BiocInstaller BiocInstaller
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
13.9 years ago Firas Swidan ▴ 50
107 results • Page 2 of 3
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Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
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