Bioconductor DMR analysis

Showing : DMR analysis • reset

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6.8k

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champ dmr analysis

updated 11 weeks ago by tahirah.yasmin2014 • 0 • written 8.5 years ago by Shicheng Guo • 0

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1.1k

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medips medip-seq dna methylation dmr analysis

updated 5.8 years ago by Lukas Chavez ▴ 570 • written 5.8 years ago by mtefit • 0

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2.1k

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bumphunter minfi lmer dmrcate dmr analysis

updated 6.4 years ago by Tim Peters ▴ 190 • written 6.4 years ago by Ashlynn • 0

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1.3k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by Ellen O • 0

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1.6k

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dmrcate dmr analysis dmr

updated 7.6 years ago by Tim Peters ▴ 190 • written 7.6 years ago by alexandria.andrayas ▴ 10

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3.3k

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methylation dmr analysis bumphunter

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by chelsey.ju • 0

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4.6k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.7 years ago by rafa ▴ 60 • written 7.7 years ago by chelsey.ju • 0

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1.4k

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biseq methylation dmr analysis

updated 7.7 years ago by Katja Hebestreit ▴ 130 • written 7.7 years ago by jjalmagro • 0

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1.2k

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seqlm IRanges R namespace dmr analysis

8.2 years ago calen.p.ryan • 0

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1.4k

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ChAMP minfi DMR dmr analysis lasso

8.9 years ago AST ▴ 60

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1.6k

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dmr analysis dmrcate

updated 9.1 years ago by andrew.j.skelton73 ▴ 370 • written 9.1 years ago by irini.liampa • 0

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1.8k

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methylation DMR analysis

9.5 years ago parker • 0

12 results • Page 1 of 1

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Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

The odds ratio, not log FC. My bad.

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

``` testResult$Eff_Condition > 0.1 ```

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

I identified 3804 genes with GO annotations. I put my liste of genes in this link [enter link description here][1] universe <- mapIds…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Hello, Thank you. I absolutely respect what you mention about p-values and logFC, I was just going to tackle that soon and thank you for po…

Comment: QSEA:Error in h(simpleError(msg, call)) by kf • 0

genome(qseaSet@regions)<-"BSgenome.Hsapiens.UCSC.hg38" solve the problem

Votes

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

Awards • All

Popular Question to rae.alshammari ▴ 10

Popular Question to Mthabisi Moyo ▴ 40