Bioconductor DNAMethylation

Showing : DNAMethylation • reset

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DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

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2.1k

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DNAMethylation ChAMP

updated 9 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

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1.1k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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932

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DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

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443

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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384

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DNAMethylation limmaGUI biostatistics limma

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Jitendra ▴ 10

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172

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 5 weeks ago by Simon Pearce • 0 • written 11 weeks ago by User3088 • 0

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254

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DNAMethylation limma methylationArrayAnalysis

9 days ago • updated 3 days ago hortense96 • 0

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310

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 15 days ago by Tim Peters ▴ 170 • written 24 days ago by s.malik • 0

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238

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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385

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by rae.alshammari ▴ 10

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DNAMethylation DMRcate

22 days ago Macsue • 0

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486

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DNAMethylation missMethyl Pathways

12 months ago Grace • 0

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535

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

14 results • Page 1 of 1

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Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length