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DNASeq
•
reset
0
votes
0
replies
653
views
Compare DNA sequence pairs and compute lengths and coordinates
DNASeq
CNEr
2.3 years ago
Md Abrar
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
0
votes
0
replies
680
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
2.7 years ago
camp
▴ 10
0
votes
0
replies
606
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
0
votes
0
replies
948
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
5.7 years ago
Cased
• 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
Cased
• 0
0
votes
1
reply
1.1k
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq
pathway analysis
protein
biomarkers
6.2 years ago
emadelhewihy
• 0
0
votes
1
reply
1.2k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.8 years ago
zwfanwz678
• 0
0
votes
0
replies
1.1k
views
Centipede foot printing export
footprinting
centipede
atac-seq
dnaseq
7.1 years ago
rbronste
▴ 60
0
votes
0
replies
1.2k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
7.9 years ago
arvand.akbari
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job
jobs
rnaseq
chipseq
dnaseq
Job
8.6 years ago
Rory Stark
★ 5.2k
3
votes
2
replies
1.3k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings
subsetting
View
dnastring
dnaseq
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
arado1
• 0
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r
ggbio
ggplot2
dnaseq
genomicranges
updated 8.8 years ago by
arfranco
▴ 130 • written 8.8 years ago by
fathniz
• 0
8
votes
9
replies
6.1k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
samuel collombet
▴ 140
9
votes
8
replies
8.9k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2
dnaseq
updated 9.6 years ago by
Michael Love
41k • written 9.6 years ago by
hughes.drew
▴ 100
1
vote
0
replies
1.5k
views
Bioconductor Employment: Statistical Research Associate
DNASeq
Cancer
DNASeq
Cancer
12.4 years ago
Martin Morgan
25k
16 results • Page
1 of 1
Recent ...
Replies
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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shepherl
3.8k
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James W. MacDonald
65k
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41k
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• 0
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to
Gordon Smyth
50k
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