Showing : HTqPCR • reset
1
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5
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591
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Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 6 months ago by • 0 • written 7 months ago by ▴ 230
0
votes
3
replies
390
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Technical Replicates in HTqPCR
HTqPCR
written 7 months ago by ▴ 230
0
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1
reply
1.2k
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HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 18 months ago by • 0 • written 12.3 years ago by ▴ 10
0
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0
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610
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
18 months ago Javier • 0
3
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4
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3.0k
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Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
0
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0
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559
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Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
2.5 years ago Marcelo Laia ▴ 450
0
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0
replies
512
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Error when reading qPCR data in SDS format
HTqPCR
3.1 years ago Nghia • 0
1
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1
reply
1.3k
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HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.3 years ago by 50k • written 8.4 years ago by ▴ 40
0
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1
reply
859
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HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 3.3 years ago by • 0 • written 5.3 years ago by • 0
0
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0
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518
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Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
3.8 years ago Maximilian Fuchs • 0
0
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0
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479
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HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
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0
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727
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Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
4.7 years ago mohammedtoufiq91 ▴ 10
0
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0
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615
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Analyze ct data using HTqPCR
HTqPCR R NormqPCR
4.8 years ago annesha • 0
0
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0
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506
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Error with HTqPCR rbind
HTqPCR
4.9 years ago NAIARA GARCÍA ▴ 10
0
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0
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630
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A problem about changeCtLayout in HTqPCR
htqpcr
5.3 years ago tropicalis • 0
0
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3
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970
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Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
5.6 years ago mohammedtoufiq91 ▴ 10
0
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0
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733
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Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
5.6 years ago dbars • 0
0
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0
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858
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HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
0
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0
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789
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Inter-run calibration in HTqPCR R package
htqpcr R
5.9 years ago dbarscortina • 0
0
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0
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916
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Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
6.2 years ago reed27 • 0
0
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0
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819
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HTqPCR for Fluidigm Results
htqpcr fluidigm
6.2 years ago rhonce • 0
0
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0
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820
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HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.2 years ago samantha_jeschonek • 0
2
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2
replies
1.0k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 6.2 years ago by 50k • written 6.2 years ago by ▴ 10
0
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0
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720
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Bugs in HTqPCR 1.30.0?
htqpcr
6.5 years ago h.roest • 0
1
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2
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1.3k
views
No differential expression with limmaCtData possible
limma htqpcr
6.5 years ago h.roest • 0
0
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0
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748
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HTqPCR package: problems with the limmaCtData function
htqpcr
6.8 years ago Frederico Moraes Ferreira ▴ 100
0
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1
reply
996
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
7.0 years ago carine.genet • 0
0
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0
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845
views
re-format data for HtqPCR
HtqPCR reshape
7.2 years ago Stefany Solano • 0
0
votes
1
reply
1.1k
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HTqPCR cannot read more recent SDS files
htqpcr
updated 7.2 years ago by • 0 • written 7.3 years ago by ▴ 40
0
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3
replies
1.3k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 7.2 years ago by • 0 • written 7.3 years ago by ▴ 40
0
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0
replies
875
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Batch Correction in HTqPCR?
qPCR htqpcr
7.3 years ago bradley • 0
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ▴ 20
0
votes
1
reply
1.2k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ★ 3.9k
3
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7
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2.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.3 years ago henrik.seidel ▴ 40
0
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0
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814
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HTqPCR - Multiple plates for multiple samples
htqpcr
7.6 years ago Angela LR • 0
0
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0
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935
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HTqPCR limma decide test issue?
limma decide test HTqPCR
7.6 years ago polemiraza ▴ 70
0
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1
reply
1.4k
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Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 7.6 years ago by • 0 • written 9.4 years ago by ▴ 830
0
votes
0
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745
views
setCategory flag and flag.pout argument problems
htqpcr
7.6 years ago h.roest • 0
0
votes
0
replies
1.0k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
7.8 years ago jamie_jabalee • 0
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
8.0 years ago virginia.claudio ▴ 10
0
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0
replies
1.1k
views
Error in readCtData
htqpcr readctdata connection readlines
8.1 years ago lizhensor • 0
0
votes
0
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933
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Help with loading Data and reading Ct values
htqpcr
8.2 years ago Pheebz • 0
0
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0
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944
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error in reading files using HTqPCR
htqpcr
10.5 years ago • updated 8.3 years ago Alex ▴ 10
0
votes
1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
8.7 years ago julio.c.silver • 0
1
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7
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1.7k
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limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 8.7 years ago by 50k • written 8.7 years ago by • 0
0
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0
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1.5k
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Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
9.0 years ago H.H. • 0
0
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2
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1.2k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
9.4 years ago samantha.smith-4 • 0
0
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0
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1.0k
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Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
9.8 years ago Peter Langfelder ★ 3.0k
0
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0
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2.1k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
10.0 years ago Guest User ★ 13k
0
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5
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1.5k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 50
50 results • Page 1 of 1
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Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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