Showing : Isoform • reset
6
votes
10
replies
3.6k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 13 months ago by ★ 5.0k • written 13 months ago by ▴ 10
0
votes
0
replies
784
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.7 years ago Craig • 0
0
votes
2
replies
1.2k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 3.1 years ago by • 0
0
votes
5
replies
3.4k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.8 years ago • updated 3.6 years ago priyanka.m • 0
0
votes
0
replies
2.1k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
5.3 years ago ra711 • 0
0
votes
5
replies
2.1k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 5.4 years ago by 53k • written 5.5 years ago by ▴ 620
0
votes
4
replies
1.8k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 5.5 years ago by 53k • written 5.5 years ago by ▴ 620
1
vote
4
replies
2.0k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 6.3 years ago by ▴ 120 • written 6.3 years ago by • 0
1
vote
4
replies
1.7k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.4 years ago by ★ 1.4k • written 6.4 years ago by • 0
1
vote
5
replies
2.0k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 7.1 years ago by ▴ 60
0
votes
0
replies
1.3k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
8.2 years ago ilyco • 0
11 results • Page 1 of 1
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Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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