Bioconductor Isoform

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3.3k

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limma isoform edgeR salmon R

updated 11 months ago by ATpoint ★ 5.0k • written 11 months ago by mohammedtoufiq91 ▴ 10

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725

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Isoform IsoformSwitchAnalyzeR

2.5 years ago Craig • 0

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1.1k

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pacbio isoform

written 2.9 years ago by lhaiyan3 • 0

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3.3k

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RNASeqData isoform DESeq2

3.6 years ago • updated 3.4 years ago priyanka.m • 0

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2.0k

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isoform RNA-seq hisat2 stringtie ballgown

5.1 years ago ra711 • 0

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2.0k

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isoform deep sequencing voom

updated 5.2 years ago by Gordon Smyth 53k • written 5.2 years ago by Ina Hoeschele ▴ 620

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1.7k

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tximport isoform voom

updated 5.3 years ago by Gordon Smyth 53k • written 5.3 years ago by Ina Hoeschele ▴ 620

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1.9k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 6.1 years ago by k.vitting.seerup ▴ 120 • written 6.1 years ago by asmita • 0

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1.6k

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gene isoform quantification rna-seq

updated 6.2 years ago by swbarnes2 ★ 1.4k • written 6.2 years ago by angel.campos • 0

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1.8k

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isoformswitchanalyzer isoform differential isoform usage

written 6.9 years ago by A ▴ 60

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1.3k

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kallisto differential isoform usage isoform

8.0 years ago ilyco • 0

11 results • Page 1 of 1

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40