Bioconductor Isoform

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limma isoform edgeR salmon R

updated 7 weeks ago by ATpoint ★ 4.6k • written 8 weeks ago by mohammedtoufiq91 ▴ 10

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530

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Isoform IsoformSwitchAnalyzeR

20 months ago Craig • 0

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821

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pacbio isoform

written 2.2 years ago by lhaiyan3 • 0

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2.8k

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RNASeqData isoform DESeq2

2.8 years ago • updated 2.7 years ago priyanka.m • 0

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1.7k

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isoform RNA-seq hisat2 stringtie ballgown

4.3 years ago ra711 • 0

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1.6k

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isoform deep sequencing voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

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1.3k

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tximport isoform voom

updated 4.5 years ago by Gordon Smyth 52k • written 4.5 years ago by Ina Hoeschele ▴ 620

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1.5k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.3 years ago by k.vitting.seerup ▴ 120 • written 5.3 years ago by asmita • 0

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1.4k

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gene isoform quantification rna-seq

updated 5.4 years ago by swbarnes2 ★ 1.4k • written 5.4 years ago by angel.campos • 0

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1.5k

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isoformswitchanalyzer isoform differential isoform usage

written 6.2 years ago by A ▴ 40

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1.1k

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kallisto differential isoform usage isoform

7.2 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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