Showing : LIMMA • reset
1
vote
2
replies
160
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
1 day ago • updated 23 hours ago Dylan.Sheerin • 0
1
vote
1
reply
125
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 3 days ago by 65k • written 3 days ago by • 0
3
votes
10
replies
279
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 12 hours ago by 65k • written 3 days ago by • 0
1
vote
2
replies
359
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 7 days ago by 50k • written 7 days ago by • 0
0
votes
1
reply
125
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 8 days ago by 50k • written 8 days ago by • 0
3
votes
4
replies
237
views
Help with error using camera() in limma
CAMERA limma
10 days ago Chris • 0
0
votes
3
replies
256
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 10 days ago by 65k • written 11 days ago by • 0
0
votes
2
replies
174
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 18 days ago by • 0
0
votes
2
replies
223
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
21 days ago • updated 18 days ago catv • 0
14
votes
17
replies
1.2k
views
Why p value inconsistent when using different number of pathway score?
limma
20 days ago • updated 9 days ago Chris • 0
5
votes
3
replies
265
views
Log-cpm values from limma
limma edgeR RNASeq
updated 19 hours ago by 50k • written 22 days ago by • 0
0
votes
7
replies
330
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
23 days ago • updated 17 days ago hortense96 • 0
1
vote
3
replies
356
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 25 days ago by 50k • written 4 weeks ago by • 0
5
votes
9
replies
941
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
4 weeks ago • updated 22 days ago Chris • 0
2
votes
6
replies
434
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
4 weeks ago Chris • 0
0
votes
1
reply
177
views
Limma design matrix only showing 3/4 treatments?
limma designmatrix
updated 4 weeks ago by 50k • written 5 weeks ago by • 0
0
votes
4
replies
321
views
Help with design.matrix
limma
5 weeks ago • updated 4 weeks ago andrea.rodriguez-martinez13 • 0
1
vote
4
replies
450
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 5 weeks ago by 50k • written 5 weeks ago by • 0
0
votes
2
replies
198
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
5 weeks ago Gimena • 0
15
votes
23
replies
2.0k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
6 weeks ago • updated 10 days ago Chris • 0
2
votes
8
replies
551
views
Microarray Limma Model fitting and DEG
limma DGEanalysis
updated 6 weeks ago by 50k • written 6 weeks ago by • 0
5
votes
25
replies
961
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 5 weeks ago by 50k • written 6 weeks ago by ▴ 10
7
votes
6
replies
470
views
Batch Effect Correction, Gene Filtering
DGE limma
updated 6 weeks ago by 50k • written 7 weeks ago by • 0
0
votes
1
reply
241
views
Using splicing junction counts with edgeR/limma-voom
splicing limma edgeR
updated 7 weeks ago by 50k • written 7 weeks ago by • 0
0
votes
4
replies
402
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
7 weeks ago • updated 6 weeks ago Efra • 0
5
votes
7
replies
469
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 6 weeks ago by 50k • written 7 weeks ago by • 0
2
votes
2
replies
271
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
8 weeks ago Sabiha ▴ 20
0
votes
2
replies
291
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
8 weeks ago kcarey • 0
1
vote
3
replies
422
views
Cross-species analysis - how to compute the mid parent value?
DESeq2 limma edgeR DifferentialExpression
written 3 months ago by • 0
2
votes
6
replies
507
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
9 weeks ago • updated 6 weeks ago Lily Cheang ▴ 10
3
votes
8
replies
529
views
Constrast for Time Course Experiments using Limma
limma
9 weeks ago dl17032000 • 0
8
votes
6
replies
482
views
DGE analysis with LIMMA
limma
updated 9 weeks ago by 50k • written 10 weeks ago by • 0
0
votes
0
replies
158
views
Can I combine collinear variables into a single value
BatchEffect limma
10 weeks ago Harrsha • 0
0
votes
3
replies
309
views
Differential enrichment analysis
limma Differentialenrichmentanalysis DEP
updated 9 weeks ago by 50k • written 10 weeks ago by • 0
0
votes
4
replies
311
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
10 weeks ago mperalc • 0
3
votes
5
replies
644
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 9 weeks ago by 42k • written 11 weeks ago by ▴ 10
2
votes
1
reply
271
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 10 weeks ago by 42k • written 10 weeks ago by ▴ 10
1
vote
2
replies
320
views
Bioconductor unreachable?
limma
11 weeks ago edoardo • 0
0
votes
9
replies
570
views
limma fo continous variables
limma DEGseq
updated 10 weeks ago by 65k • written 11 weeks ago by • 0
0
votes
2
replies
302
views
limma model matrix questions
limmaGUI limma pairedsamples
11 weeks ago whyw6948 • 0
0
votes
2
replies
331
views
Limma with replicates at different time points
RNAs limma Differen
12 weeks ago • updated 10 weeks ago alessandro • 0
2
votes
1
reply
313
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 12 weeks ago by ★ 4.1k • written 12 weeks ago by • 0
1
vote
3
replies
365
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 12 weeks ago by 50k • written 3 months ago by ▴ 10
0
votes
4
replies
380
views
limma with interaction term
R biostatistics limma Epigenetics
3 months ago • updated 10 weeks ago Jitendra ▴ 10
3
votes
2
replies
305
views
Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
3 months ago Shaimaa Gamal • 0
2
votes
3
replies
336
views
Longitudinal analysis in Limma: Block=ID as random effect
limma
3 months ago COPD_Project • 0
2
votes
2
replies
296
views
Limma design for 3 replicated time courses comparing treatment vs placebo
design limma
3 months ago SamGG ▴ 350
1
vote
4
replies
421
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 3 months ago by 50k • written 3 months ago by ▴ 10
4
votes
3
replies
367
views
voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 3 months ago by 50k • written 3 months ago by • 0
2
votes
3
replies
378
views
TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 3 months ago by 65k • written 3 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Awards • All
Popular Question to maria.soler • 0
Popular Question to Pietro ▴ 40
Popular Question to neilzhao ▴ 30
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Locations • All
France, 1 minute ago
UPF, Barcelona, Spain, 12 minutes ago
Canada, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
San Diego, 1 hour ago
Traffic: 419 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6