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Log2
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reset
3
votes
6
replies
2.0k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
18 months ago
Sara
• 0
6
votes
8
replies
5.8k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 18 months ago by
James W. MacDonald
66k • written 8.1 years ago by
serpalma.v
▴ 60
3
votes
1
reply
1.5k
views
log2 of normalized counts for further analyzes
DESeq2
log2
normalized
counts
updated 15 months ago by
James W. MacDonald
66k • written 15 months ago by
Laia
▴ 10
0
votes
1
reply
915
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.4 years ago by
Gordon Smyth
50k • written 2.4 years ago by
johndavidgriner74
• 0
0
votes
8
replies
2.7k
views
DESeq2 different log2FC and p-value filtering parameters results comparison
log2
DESeq2
22 months ago
User000
• 0
2
votes
4
replies
3.1k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.6 years ago by
James W. MacDonald
66k • written 9.6 years ago by
Jahn Davik
▴ 110
0
votes
1
reply
2.0k
views
How to plot the RMA log2 normalised data from Affymetrix
log2
RMA
Affymetrix
affy
Normalization
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
Lara
• 0
0
votes
0
replies
937
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.9 years ago
prakashpandey1111
• 0
0
votes
0
replies
1.4k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.7 years ago
agdif
▴ 10
0
votes
0
replies
801
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago
Seymoo
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: recount3 problem downloading data from source sra
by
PABLO ANTONIO
• 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working
by
websterdelacruz2087055
• 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: recount3 problem downloading data from source sra
Answer: recount3 problem downloading data from source sra
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
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