Showing : Log2 • reset
3
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log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 14 months ago by 65k • written 14 months ago by ▴ 10
3
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6
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1.9k
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
17 months ago Sara • 0
0
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8
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2.6k
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
21 months ago User000 • 0
0
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1
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874
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
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1
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1.9k
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How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.1 years ago by ★ 3.9k • written 3.1 years ago by • 0
0
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0
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1.4k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.6 years ago agdif ▴ 10
0
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0
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919
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.8 years ago prakashpandey1111 • 0
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0
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779
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.8 years ago Seymoo • 0
6
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8
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5.6k
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 16 months ago by 65k • written 8.0 years ago by ▴ 60
2
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4
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3.0k
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exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
10 results • Page 1 of 1
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Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Hi, Thank you very much for your answer. It's true that I only used 6 samples for this analysis, which is consistent with your explanation…
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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