Showing : Log2 • reset
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
21 months ago User000 • 0
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 17 months ago by 65k • written 8.1 years ago by ▴ 60
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6
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
17 months ago Sara • 0
2
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4
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3.1k
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exporting limma log2 data
limma export log2 data agilent
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 110
3
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1.5k
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log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 15 months ago by 65k • written 15 months ago by ▴ 10
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1
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2.0k
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How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
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1
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900
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
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1.4k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.6 years ago agdif ▴ 10
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.9 years ago prakashpandey1111 • 0
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790
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.9 years ago Seymoo • 0
10 results • Page 1 of 1
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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