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Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …
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It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.
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Understood, thanks. The issue I'm seeing is that even after normalization, the MDSplot still orders samples by library size. I suspect cell…
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This site is meant to provide technical help for Bioconductor packages. Your questions would be more on-topic for biostars.org.
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