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Showing :
QuasR
•
reset
0
votes
7
replies
3.5k
views
'CreateProcess' failed to run error with Rbowtie
software error
quasr
rbowtie
9.6 years ago
annabel.ferguson
• 0
1
vote
1
reply
3.3k
views
ERROR: lazy loading failed for package 'QuasR'
QuasR
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
Hackerzone85
• 0
0
votes
6
replies
3.3k
views
RNA-seq analysis with R/BioC: alignment and read counts
drosophila melanogaster
quasR
genomicfeatures
genomicranges
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Fiona
▴ 70
0
votes
8
replies
3.2k
views
QuasR: how to use an indexed reference genome?
BSgenome
BSgenome
genomes
QuasR
BSgenome
BSgenome
genomes
QuasR
updated 11.0 years ago by
Michael Stadler
▴ 350 • written 11.0 years ago by
Paul Shannon
▴ 750
0
votes
7
replies
2.6k
views
QuasR on Linux Cluster
BSgenome
BSgenome
QuasR
BSgenome
BSgenome
QuasR
updated 10.5 years ago by
Michael Stadler
▴ 350 • written 10.6 years ago by
Ugo Borello
▴ 340
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
rna seq
▴ 90
2
votes
5
replies
2.1k
views
QuasR: Loading BAM files as start point
quasr
updated 8.7 years ago by
Michael Stadler
▴ 350 • written 8.7 years ago by
rahel14350
▴ 10
0
votes
7
replies
2.1k
views
QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
Alignment
Rattus norvegicus
BSgenome
BSgenome
QuasR
Alignment
Rattus norvegicus
BSgenome
updated 10.2 years ago by
Hervé Pagès
16k • written 10.2 years ago by
Guido Hooiveld
★ 3.9k
1
vote
1
reply
2.0k
views
multiple threads on QuasR
Alignment
GLAD
QuasR
Alignment
GLAD
QuasR
11.1 years ago • updated 11.0 years ago
Michael Stadler
▴ 350
0
votes
5
replies
1.8k
views
SpliceMap in QuasR package failing when sorting 25mer-alignments
rnaseq
quasr
alignment
updated 8.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.4 years ago by
nadia_boufaied
• 0
0
votes
0
replies
1.8k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
genomes
QuasR
BSgenome
convert
BSgenome
genomes
QuasR
10.5 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.8k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
sven.schuierer
• 0
0
votes
4
replies
1.7k
views
Splicemap (in QuasR) failed while aligning 25mers
QuasR
rnaseq
alignment
splicemap
bowtie2
8.2 years ago • updated 8.1 years ago
Gabriella
• 0
0
votes
3
replies
1.6k
views
Summarization by gene or exon or transcript
QuasR
QuasR
10.5 years ago
Michael Stadler
▴ 350
2
votes
4
replies
1.6k
views
Bowtie % mapped reads for DGE
Bowtie
quasr
rnaseq
updated 8.3 years ago by
Dario Strbenac
★ 1.5k • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
2
replies
1.6k
views
QuasR special case alignment
Alignment
genomes
QuasR
Alignment
genomes
QuasR
updated 11.0 years ago by
Ugo Borello
▴ 340 • written 11.0 years ago by
Michael Stadler
▴ 350
1
vote
6
replies
1.6k
views
Multithreading problems with qalign
quasr
parallel
updated 7.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.4 years ago by
kirt.onthank
• 0
1
vote
0
replies
1.6k
views
QuasR - preprocessReads fails with a SRFilterResult error
quasr
quasr error
7.2 years ago
jlncrnt
▴ 10
0
votes
2
replies
1.5k
views
QuasR question
QuasR
updated 9.7 years ago by
Daniel Soronellas
▴ 10 • written 9.7 years ago by
Michael Stadler
▴ 350
0
votes
3
replies
1.5k
views
RNAseq_alignment_SpliceMap processing time_QuasR
SpliceMap
QuasR
RNAseq
Alignment
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
1
reply
1.4k
views
QuasR: spliced and unspliced alignment
quasr
alignment
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
nadia_boufaied
• 0
0
votes
0
replies
1.4k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
QuasR
BSgenome
convert
BSgenome
QuasR
10.5 years ago
Guest User
★ 13k
1
vote
2
replies
1.3k
views
Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR
quasr error
alignmentparameters
quasr
5.5 years ago
Amer Ghalawinji
• 0
0
votes
2
replies
1.3k
views
QuasR alignment interruption
quasr
updated 8.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.4 years ago by
nadia_boufaied
• 0
0
votes
1
reply
1.3k
views
Postdoctoral research fellow
QuasR
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
2
replies
1.3k
views
Fusion gene mutation detection
bioconductor
quasr
7.8 years ago
maedakus
▴ 10
0
votes
0
replies
1.3k
views
QuasR for miRNA
miRNA
QuasR
miRNA
QuasR
10.0 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.2k
views
QuasR special case alignment
Alignment
QuasR
Alignment
QuasR
updated 11.0 years ago by
Michael Stadler
▴ 350 • written 11.0 years ago by
Ugo Borello
▴ 340
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.3 years ago
rna seq
▴ 90
0
votes
3
replies
1.1k
views
QuasR::qAlign: how to specify maximum allowed number of mismatches and output all alignments
QuasR
updated 4.4 years ago by
Michael Stadler
▴ 350 • written 4.4 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
QuasR - importing alignment files from other aligners
quasr
updated 9.5 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.5 years ago by
sven.schuierer
• 0
0
votes
1
reply
1.1k
views
Memory error building index
QuasR
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
hmabril
• 0
1
vote
4
replies
1.1k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 5.2 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
1
reply
1.1k
views
qCount with a GRangesList is very slow
QuasR
qCount
GRangesList
6.8 years ago
vakul.mohanty
▴ 20
1
vote
1
reply
1.0k
views
QuasR error message
QuasR
RNA_Seq
updated 6.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 6.4 years ago by
ta_awwad
▴ 10
0
votes
1
reply
1.0k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.2 years ago by
Michael Stadler
▴ 350 • written 3.2 years ago by
h.kozlowski
• 0
0
votes
0
replies
947
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.4 years ago
guillaume.dachy
• 0
0
votes
0
replies
941
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
872
views
can not depends QuasR in another package
QuasR
6.9 years ago
zwfanwz678
• 0
2
votes
1
reply
855
views
preprocessReads: Can't remove more than 17 nucleotides
QuasR
preprocessReads
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
sha-ked
• 0
0
votes
1
reply
789
views
RNAseq analysis of organism not included in BSgenome using QuasR
QuasR
updated 3.6 years ago by
Michael Stadler
▴ 350 • written 3.6 years ago by
anuranjansrathore
• 0
0
votes
1
reply
771
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 3.8 years ago by
Michael Stadler
▴ 350 • written 3.8 years ago by
jabbar_campbell
• 0
43 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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