Showing : Rsubread • reset
2
votes
3
replies
658
views
featureCounts segmentation fault with large chromosomes
Rsubread
29 days ago • updated 17 days ago vkkodali ▴ 10
0
votes
0
replies
109
views
Rsubread - sublong function
pacbio sublong Rsubread
5 weeks ago thomas.heigl.ibk • 0
0
votes
1
reply
190
views
[BUG] featureCounts doesn't assign primary alignment of a multi-mapped read, even with `--primary` specified
featureCounts Rsubread
7 weeks ago isaac.vock • 0
0
votes
5
replies
685
views
Rsubread alignment crashes at 35%, valgrind indicates invalid writes
Rsubread
updated 6 weeks ago by ▴ 450 • written 10 weeks ago by • 0
1
vote
2
replies
491
views
mates counted separately in case one mate is unmapped (when otherwise counting read pairs)
featureCounts Rsubread
3 months ago Anke • 0
0
votes
1
reply
329
views
featureCounts from Rsubread
Rsubread
updated 4 months ago by 51k • written 4 months ago by • 0
2
votes
4
replies
921
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
7 months ago • updated 5 months ago isaac.vock • 0
0
votes
6
replies
1.2k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq Rsubread
6 months ago • updated 5 months ago atan • 0
0
votes
0
replies
253
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
7 months ago Dario Strbenac ★ 1.5k
2
votes
3
replies
510
views
Rsubread crashes Rstudio while alignment
Rsubjunc Rsubread
updated 7 months ago by ★ 3.6k • written 8 months ago by • 0
0
votes
1
reply
387
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 8 months ago by 51k • written 8 months ago by ▴ 180
0
votes
0
replies
353
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
8 months ago chris2.a.white • 0
1
vote
1
reply
613
views
featureCounts unable to assign long reads to one specific isoform
featureCounts Rsubread
updated 8 months ago by ★ 3.6k • written 9 months ago by • 0
0
votes
0
replies
383
views
Unclear exon-exon connection after RSubjunc() usage
IGV Rsubjunc Rsubread
8 months ago thomas.heigl.ibk • 0
7
votes
28
replies
7.0k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread featurecounts
updated 9 months ago by 51k • written 9.7 years ago by ★ 7.9k
1
vote
1
reply
656
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 8 months ago by ▴ 450 • written 9 months ago by ▴ 10
0
votes
4
replies
820
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts Rsubread
updated 9 months ago by 51k • written 9 months ago by • 0
4
votes
6
replies
1.1k
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts Rsubread
10 months ago • updated 9 months ago isaac.vock • 0
1
vote
2
replies
667
views
Problems with Feature counting
Rsubread BAMfiles GTFfile
10 months ago mirjanakessler • 0
0
votes
1
reply
565
views
Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 12 months ago by 51k • written 12 months ago by • 0
2
votes
2
replies
1.1k
views
Long-read mode in featureCounts
Rsubread LongRead
13 months ago mmisak • 0
0
votes
2
replies
1.7k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
13 months ago Gregory • 0
0
votes
0
replies
473
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount Rsubread HPC
14 months ago kthapa • 0
0
votes
2
replies
827
views
Rsubread: .bai file lacks data for `samtools idxstats`
Rsubread
14 months ago Gerhard Thallinger ▴ 180
0
votes
0
replies
495
views
Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 14 months ago by 51k • written 14 months ago by • 0
2
votes
3
replies
1.0k
views
Rsubread: subjunc() loads index repeatedly
Rsubread
16 months ago • updated 15 months ago Gerhard Thallinger ▴ 180
0
votes
2
replies
858
views
R session aborts after running align function on Rsubread
Rsubread Alignment
updated 15 months ago by ★ 3.6k • written 15 months ago by • 0
0
votes
2
replies
1.6k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 15 months ago by 67k • written 15 months ago by • 0
0
votes
1
reply
723
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 15 months ago by 67k • written 15 months ago by • 0
1
vote
1
reply
916
views
featureCounts bug with unpaired reads
Rsubread featureCounts
updated 16 months ago by ▴ 450 • written 16 months ago by • 0
0
votes
2
replies
966
views
'Killed' error during RNAseq alignment
subjunc data.frame myExons Rsubread
updated 17 months ago by ★ 4.5k • written 17 months ago by • 0
0
votes
1
reply
1.2k
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 18 months ago by ★ 3.6k • written 19 months ago by • 0
0
votes
0
replies
603
views
How to extract the counts for non-split reads from paired end RNA-seq data?
rsubread featurecounts Bioconductor countsextraction
19 months ago barrypraveen • 0
1
vote
3
replies
1.1k
views
Correct script for featurecounts in Rsubread
Rsubread Rsu
20 months ago rmoorehe • 0
2
votes
9
replies
2.2k
views
featureCounts with NCBI T2T not capturing all genes
CHM13v2.0 featureCounts T2T Rsubread
20 months ago Hilary ▴ 40
0
votes
2
replies
1.1k
views
Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and largestOverlap with fractional counts
Rsubread featureCounts
updated 20 months ago by ★ 3.6k • written 24 months ago by • 0
2
votes
4
replies
2.2k
views
10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
Rsamtools Rsubread
updated 21 months ago by 51k • written 21 months ago by • 0
0
votes
0
replies
561
views
Rsubread align every slow in mac but faster in windows
Rsubread
22 months ago Wei • 0
3
votes
3
replies
4.3k
views
Why is it better to count genes at the exon-level using subread::featureCounts()?
RNASeq Rsubread featureCounts Quantification
updated 22 months ago by 51k • written 22 months ago by • 0
2
votes
3
replies
1.7k
views
Rsubread featureCounts outputs dozens of temp files, no counts
RNAseq R Rsubread featurecounts RNASeq
updated 2.0 years ago by 51k • written 2.0 years ago by • 0
0
votes
2
replies
1.0k
views
Rsubread align --R session aborts
RNA Alignment Rsubread
2.3 years ago • updated 2.2 years ago sreekalasn • 0
13
votes
20
replies
4.1k
views
cellCounts() function floating point error
Rsubread
2.5 years ago • updated 2.3 years ago J-E • 0
0
votes
1
reply
1.3k
views
Function Request for Rsubread or tximport: parsing command-line featureCounts output
tximport Rsubread
updated 2.5 years ago by ★ 4.5k • written 2.5 years ago by ▴ 10
1
vote
1
reply
1.7k
views
Using featureCounts and downloading Rsubread
featureCounts RNASeq Rsubread R
updated 2.5 years ago by 51k • written 2.5 years ago by • 0
1
vote
5
replies
1.6k
views
Case Studies Data Missing in Rsubread
Rsubread
updated 19 months ago by 51k • written 2.6 years ago by • 0
1
vote
4
replies
1.9k
views
Annotated file with gene ID (instead of gene symbol)
Rsubread featureCounts
2.6 years ago Chise ▴ 10
1
vote
2
replies
1.2k
views
Aliases of drosophila gene names
Drosophila Rsubread dm6
2.6 years ago Chise ▴ 10
3
votes
11
replies
4.4k
views
The low successful assignment ratio of FeatureCounts
FeatureCounts Rsubread Subread
2.6 years ago Sarah_piggy ▴ 10
0
votes
1
reply
1.0k
views
Using Rsubread buildindex with GRCh37.p13.genome.fa.gz gives me an error
Rsubread
updated 2.6 years ago by 51k • written 2.6 years ago by • 0
2
votes
1
reply
1.3k
views
Can Rsubread output use Ensembl gene IDs
Ensembl Rsubread
updated 2.7 years ago by 51k • written 2.7 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Is it recommended to analyze different tissues together when using edgeR
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