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zhanghongjie000
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Gregor Rot
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2.3 years ago • updated 2.2 years ago
Wolfgang RAFFELSBERGER
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written 2.9 years ago by
Saransh
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6.3 years ago
cristinapasi
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7.4 years ago • updated 7.3 years ago
florian.reisinger
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updated 2.6 years ago by
damian.szk
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written 2.7 years ago by
Wolfgang RAFFELSBERGER
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5.1 years ago
Samuel Lee
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13 months ago
Charlotte Soneson
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updated 21 days ago by
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written 5 months ago by
Abhishek
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updated 6.1 years ago by
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hkarakurt
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23 months ago
AstrobioMike
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updated 2.7 years ago by
damian.szk
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written 2.7 years ago by
Ashish Jain
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7 months ago
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Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
•
0
Thank you for your comment!
I'll review my code from top to bottom.
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