Bioconductor TMM

Showing : TMM • reset

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1.3k

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TMM limma

2.5 years ago Nisha • 0

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1.4k

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edgeR SequencingData miRNA TMM Normalization

updated 3.0 years ago by Gordon Smyth 53k • written 3.0 years ago by tleona3 • 0

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2.0k

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TMM edgeR qsea MEDIPS

updated 3.3 years ago by Simon Pearce • 0 • written 3.4 years ago by a.riediger ▴ 20

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1.4k

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RNASeq Normalization TMM edgeR

updated 3.5 years ago by Gordon Smyth 53k • written 3.5 years ago by e.g.w.miller ▴ 10

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2.3k

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csaw edger tmm chipseq

updated 3.8 years ago by Rory Stark ★ 5.2k • written 3.9 years ago by maria.soler • 0

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2.7k

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DESeq2 tximport Kallisto TMM edgeR

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by BioNovice247 • 0

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6.4k

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EdgeR normalization fastq txt TMM

updated 3.7 years ago by Gordon Smyth 53k • written 10.2 years ago by hamidrezarazzaghian • 0

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1.4k

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edgeR DifferentialExpression TMM RNASeq

updated 4.3 years ago by Gordon Smyth 53k • written 4.3 years ago by hamidrezarazzaghian • 0

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1.4k

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diffbind CPM TMM

updated 5.8 years ago by Rory Stark ★ 5.2k • written 5.8 years ago by Guandong Shang ▴ 40

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2.5k

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csaw TMM

6.4 years ago ATpoint ★ 5.0k

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1.5k

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limma TMM differential expression normalization rnaseq

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by natalia_lt • 0

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2.7k

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edger TMM DEG normalization

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by rproendo ▴ 30

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2.8k

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TMM deseq2 smallrna rnaseq

updated 7.2 years ago by António Miguel de Jesus Domingues ▴ 510 • written 7.2 years ago by Konstantinos Yeles ▴ 90

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2.9k

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salmon tximport gene length eqtl TMM

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by VSM ▴ 120

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1.7k

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normalization quantile normalization tmm edger

updated 7.9 years ago by Gordon Smyth 53k • written 7.9 years ago by bilcodygm • 0

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7.4k

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limma edger plotmds tmm masigpro

8.1 years ago dacaba.92 ▴ 10

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3.9k

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edgeR tmm normalization counts

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by jol.espinoz ▴ 40

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3.2k

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differential expression TMM normalization rnaseq edger

8.8 years ago aec ▴ 90

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8.2k

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cpm gene expression matrix tmm normailzation

9.0 years ago • updated 8.9 years ago kkadzi25 • 0

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2.7k

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diffbind chip-seq normalization deseq2 tmm

updated 9.0 years ago by Rory Stark ★ 5.2k • written 9.0 years ago by siklenkak • 0

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4.4k

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TMM normalization edgeR

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by Sara ▴ 20

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2.5k

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Rory Stark diffbind TMM edgeR chipseq

updated 9.6 years ago by Rory Stark ★ 5.2k • written 9.7 years ago by akdess • 0

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1.8k

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TMM edgeR

9.6 years ago humberto_munoz • 0

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2.8k

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regionCounts TMM csaw

9.6 years ago saadmurtazakhan ▴ 10

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4.6k

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chip-seq TSS TMM csaw

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by saadmurtazakhan ▴ 10

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5.6k

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edgr tmm normalization

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by Assa Yeroslaviz ★ 1.5k

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13k

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rnaseq normalization tpm tmm

10.3 years ago nickbern92 • 0

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3.3k

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matlab calcnormfactors TMM edgeR

updated 10.6 years ago by Gordon Smyth 53k • written 10.6 years ago by katherine.beaulieu14 • 0

28 results • Page 1 of 1

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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