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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
5
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4
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5.5k
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Problem using BiocUpgrade
update
bioclite
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
dianmante
• 0
3
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0
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794
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News:
Support Site Updates
support.bioconductor.org
update
News
5.3 years ago
shepherl
3.8k
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5
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Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
bs14ab
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1
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3
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1.5k
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How to update the data in an experimental data package
experimentdata
update
updated 9.6 years ago by
Laurent Gatto
1.6k • written 9.6 years ago by
paul.theodor.pyl
▴ 10
1
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2
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6.6k
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Can't update DESeq2 to most updated version
deseq2
update
9.3 years ago
zshao1
• 0
1
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3
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2.0k
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update all/some/none how to set default to "update all"
biocLite
update
all
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updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
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2
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Having trouble updating Bioconductor
installation
update
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
debg
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0
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PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db
update
annotation
go
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
alfonsosaera
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0
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493
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Updated package is not the version specified on the homepage
Versions
Update
BindingSiteFinder
updated 15 months ago by
Mike Smith
★ 6.5k • written 15 months ago by
M.Klostermann
• 0
0
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2
replies
660
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New release or do I submit as a new package if package update includes a new function
update
new release
version
4.6 years ago
zzrickli
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0
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3
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1.3k
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Cant update old packages
software error
packages
update
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
bs14ab
• 0
0
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4
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1.3k
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Difficulties updating a package on Bioconductor
update
Omixer
maintainer
updated 3.4 years ago by
shepherl
3.8k • written 3.4 years ago by
l.j.sinke
• 0
0
votes
0
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878
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HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.2 years ago
Malcolm Cook
★ 1.6k
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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