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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
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News: course - single-cell RNAseq data analysis with R and Bioconductor
Workshop scRNAseq
19 months ago info ▴ 10
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News: Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
Workshop
2.4 years ago Laurent Gatto 1.6k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.2 years ago • updated 23 months ago Wolfgang Huber ★ 13k
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News: BioC Asia Virtual Meeting, 1-4 November 2021
Workshop Asia BioCAsia Conference
3.2 years ago Peter Hickey ▴ 740
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998
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News: Terra / AnVIL R / Bioconductor Popup Workshops
AnVIL workshop Bioconductor Terra
3.7 years ago shepherl 4.1k
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1.3k
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News: Extended submission deadline for EuroBioc2020
talk workshop conference eurobioc poster
written 4.1 years ago by ▴ 350
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News: [CDSB] Workshop 2020: Building workflows with RStudio and Bioconductor for single cell RNA-seq analysis
CDSB Mexico Workshop News
4.8 years ago Leonardo Collado Torres ★ 1.1k
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1.6k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 5.8 years ago by 1.6k
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News: Ascona Workshop 2019 - Statistical Challenges in Medical Data Science, 16-21 June 2019
workshop News
6.2 years ago Wolfgang Huber ★ 13k
4
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2.0k
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course workshop News
7.9 years ago • updated 7.8 years ago Laurent Gatto 1.6k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
8.3 years ago Wolfgang Huber ★ 13k
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News: Workshop: microRNA Analysis Using Next-Generation Sequencing - From microRNA profiling and prediction to extensive downstream analyses
Workshop Course News
8.5 years ago adele.feuerstein • 0
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News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
workshop News
8.7 years ago • updated 8.6 years ago Wolfgang Huber ★ 13k
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
Course workshop News
8.8 years ago Mark Dunning ★ 1.1k
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3.2k
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News: European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers conference workshop News
updated 9.2 years ago by 1.6k • written 9.3 years ago by ★ 1.1k
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News: C1omics: single-cell omics methods and applications, Manchester 24-25 Nov 2015
single cell conference workshop News
9.2 years ago Wolfgang Huber ★ 13k
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1.9k
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News: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
Statistical Learning Workshop News
10.3 years ago • updated 9.9 years ago Wolfgang Huber ★ 13k
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News: European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers workshop conference meeting News
10.2 years ago Wolfgang Huber ★ 13k
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1.6k
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop ngs training News
10.2 years ago Thomas Girke ★ 1.7k
1
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News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
10.2 years ago gagneur ▴ 10
21 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
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