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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
17 months ago Maria Doyle ▴ 110
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News: course - single-cell RNAseq data analysis with R and Bioconductor
Workshop scRNAseq
2.6 years ago info ▴ 10
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News: Introduction to genomic data analysis with R and Bioconductor in Heidelberg, 12-13 September 2022
Workshop
3.4 years ago Laurent Gatto 1.6k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
4.1 years ago • updated 2.9 years ago Wolfgang Huber ★ 13k
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News: BioC Asia Virtual Meeting, 1-4 November 2021
Workshop Asia BioCAsia Conference
4.2 years ago Peter Hickey ▴ 760
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News: Terra / AnVIL R / Bioconductor Popup Workshops
AnVIL workshop Bioconductor Terra
4.7 years ago shepherl 4.2k
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News: Extended submission deadline for EuroBioc2020
talk workshop conference eurobioc poster
written 5.1 years ago by ▴ 350
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News: [CDSB] Workshop 2020: Building workflows with RStudio and Bioconductor for single cell RNA-seq analysis
CDSB Mexico Workshop News
5.8 years ago Leonardo Collado Torres ★ 1.1k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 6.8 years ago by 1.6k
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News: Ascona Workshop 2019 - Statistical Challenges in Medical Data Science, 16-21 June 2019
workshop News
7.1 years ago Wolfgang Huber ★ 13k
4
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2.2k
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course workshop News
8.9 years ago • updated 8.7 years ago Laurent Gatto 1.6k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
9.3 years ago Wolfgang Huber ★ 13k
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News: Workshop: microRNA Analysis Using Next-Generation Sequencing - From microRNA profiling and prediction to extensive downstream analyses
Workshop Course News
9.5 years ago adele.feuerstein • 0
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News: Workshop: Clinical Bioinformatics as a Service, at ECCB 2016 - register till 29 May
workshop News
9.7 years ago • updated 9.6 years ago Wolfgang Huber ★ 13k
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
Course workshop News
9.8 years ago Mark Dunning ★ 1.1k
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News: European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers conference workshop News
updated 10.1 years ago by 1.6k • written 10.3 years ago by ★ 1.1k
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News: C1omics: single-cell omics methods and applications, Manchester 24-25 Nov 2015
single cell conference workshop News
10.2 years ago Wolfgang Huber ★ 13k
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News: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
Statistical Learning Workshop News
11.3 years ago • updated 10.9 years ago Wolfgang Huber ★ 13k
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News: European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers workshop conference meeting News
11.2 years ago Wolfgang Huber ★ 13k
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop ngs training News
11.2 years ago Thomas Girke ★ 1.7k
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News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
11.2 years ago gagneur ▴ 10
21 results • Page 1 of 1
Recent ...
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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