Bioconductor Analysis

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1.7k

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cummeRbund Script analysis RNAseq cuffdiff

updated 9.0 years ago by andrew.j.skelton73 ▴ 370 • written 9.0 years ago by mfahim • 0

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1.4k

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edger data analysis

8.8 years ago Pau Marc Muñoz Torres ▴ 20

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1.8k

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Proteomics analysis

updated 22 months ago by jeroen.gilis ▴ 90 • written 22 months ago by Shakiba • 0

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816

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ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

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902

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microarray protein analysis ProteomeProfiler

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by hcnbox • 0

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1.4k

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agilent microarrays microrna analysis

6.7 years ago arisarkar88 ▴ 40

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889

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genomics analysis bioinformatics Job

4.9 years ago jmaanaki • 0

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1.8k

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minfi 450k EPIC analysis

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by maduran • 0

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1.2k

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non-model enrichment organisms analysis

updated 17 months ago by Guido Hooiveld ★ 3.9k • written 19 months ago by yuhang • 0

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546

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R analysis p_values RNASeq

updated 2.3 years ago by Sean Davis 21k • written 2.3 years ago by johndavidgriner74 • 0

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514

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analysis R GOfuncR

updated 10 months ago by Lluís Revilla Sancho ▴ 730 • written 10 months ago by Eliza • 0

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1.8k

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mta10 affy analysis

7.7 years ago iankoudinova ▴ 10

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1.7k

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microarray affymetrix microarrays analysis

updated 8.6 years ago by Guido Hooiveld ★ 3.9k • written 8.6 years ago by Michaela.Fuchs • 0

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912

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microarray analysis

6.9 years ago arisarkar88 ▴ 40

14 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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