Showing : arrayQualityMetrics • reset
10
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
6
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11
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3.7k
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arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.8 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
4
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6
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4.5k
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arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
4
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3
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1.5k
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arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.5 years ago by 65k • written 9.5 years ago by • 0
4
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4
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1.1k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.4 years ago by ★ 6.5k • written 5.4 years ago by ▴ 10
3
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1
reply
1.9k
views
arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 50
2
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1
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1.4k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 30
2
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4
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2.3k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 30
2
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0
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1.1k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
7.5 years ago Bouzid.a ▴ 20
1
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3
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1.1k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by • 0
1
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2
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2.4k
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
1
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3
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1.8k
views
Error arrayQualityMetrics
arrayQualityMetrics
updated 2.5 years ago by ★ 6.5k • written 2.5 years ago by • 0
1
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3
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2.4k
views
Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.8 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
1
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1
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1.3k
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arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 10
1
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2
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2.6k
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arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.2 years ago Guest User ★ 13k
1
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1
reply
779
views
Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
0
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0
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975
views
arrayQualityMetrics - how do I use this with an MAList object???
convert arrayQualityMetrics convert arrayQualityMetrics
15.6 years ago Park-Ng, Zaneta ▴ 40
0
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1
reply
949
views
arrayQualityMetrics, Outlier
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ▴ 280 • written 15.7 years ago by ▴ 200
0
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2
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920
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arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 280
0
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1
reply
820
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Array quality question
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
0
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2
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1.2k
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ArrayQualityMetrics: Problem with labels in plots. A bug??
affyPLM arrayQualityMetrics affyPLM arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 40
0
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1
reply
969
views
Error in X11(paste("png::", filename, sep = ""),
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ▴ 200
0
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3
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1.2k
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arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 16.4 years ago by ▴ 280 • written 16.4 years ago by ▴ 270
0
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1
reply
833
views
problem with arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 14.4 years ago by ▴ 280 • written 14.4 years ago by ▴ 450
0
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3
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1.6k
views
arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.3 years ago by ▴ 630 • written 14.3 years ago by ▴ 160
0
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8
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5.5k
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arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 50
0
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3
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1.0k
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quality assessment of microarray using arrayQualityMetrics
Microarray Normalization arrayQualityMetrics Microarray Normalization arrayQualityMetrics
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 70
0
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1
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875
views
arrayQualityMetrics: beutifying the outputs
affy arrayQualityMetrics affy arrayQualityMetrics
updated 14.0 years ago by ▴ 110 • written 14.0 years ago by ▴ 80
0
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0
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857
views
Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.0 years ago Daniel Brewer ★ 1.9k
0
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0
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1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
13.9 years ago Dick Beyer ★ 1.4k
0
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1
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3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
0
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2
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1.2k
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ArrayQualityMetrics: Problem with labels in plots
Annotation arrayQualityMetrics Annotation arrayQualityMetrics
14.5 years ago elliot harrison ▴ 230
0
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1
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1.2k
views
QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.4 years ago by ▴ 280 • written 14.5 years ago by ▴ 10
0
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1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
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3
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1.2k
views
ArrayQualityMetrics: Problem with labels in plots. A bug??
arrayQualityMetrics arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 150
0
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0
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683
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announcing a new version of arrayQualityMetrics in the development branch
GO arrayQualityMetrics GO arrayQualityMetrics
13.2 years ago Wolfgang Huber ★ 13k
0
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1
reply
885
views
Error normalizing merged data sets
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ▴ 910 • written 14.6 years ago by ▴ 70
0
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4
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1.4k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
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1
reply
931
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ★ 13k
0
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0
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1.1k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.2 years ago Assa Yeroslaviz ★ 1.5k
0
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14
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2.1k
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 210
0
votes
1
reply
953
views
arrayQualityMetrics with R 2.13.0 fails
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 20
0
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0
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1.4k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.0 years ago chawla ▴ 190
0
votes
2
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1.3k
views
arrayQualityMEtrics
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 210
0
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6
replies
1.9k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 110
0
votes
0
replies
891
views
how to make an MA plot with single color agilent microarray?
Microarray limma arrayQualityMetrics Microarray limma arrayQualityMetrics
12.8 years ago Wolfgang Huber ★ 13k
0
votes
3
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624
views
array names in arrayQualityMetrics report
arrayQualityMetrics arrayQualityMetrics
12.6 years ago rchavez ▴ 20
0
votes
6
replies
1.4k
views
arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
arrayQualityMetrics arrayQualityMetrics
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
0
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3
replies
1.3k
views
arrayQualityMetrics produces non-interactive PCA plot (Figure 3)
arrayQualityMetrics arrayQualityMetrics
12.4 years ago Vladimir Zhurov ▴ 70
0
votes
2
replies
1.9k
views
arrayQualityMetrics is not working
arrayQualityMetrics arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 60
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Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
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