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bioccheck
•
reset
7
votes
2
replies
1.2k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.7 years ago by
ZheFrench
▴ 60
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
5
votes
2
replies
962
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.5 years ago by
Steve Lianoglou
★ 13k • written 2.5 years ago by
pouryany
• 0
4
votes
6
replies
4.3k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.9 years ago by
shepherl
3.9k • written 5.9 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.9 years ago by
Marcel Ramos
690 • written 8.0 years ago by
richierocks
▴ 40
2
votes
10
replies
2.4k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 19 months ago by
Marek Gierlinski
▴ 30 • written 7.6 years ago by
david.a.quigley
• 0
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
liz.ingsimmons
▴ 140
1
vote
2
replies
1.9k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.8 years ago
j.flesch
▴ 10
1
vote
2
replies
1.3k
views
BiocCheck path escape issue
bioccheck
bug
7.1 years ago • updated 7.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
717
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.1 years ago by
shepherl
3.9k • written 3.1 years ago by
wewolski
▴ 10
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.1 years ago
kmezhoud
▴ 10
0
votes
2
replies
885
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
ihnatova
• 0
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.5 years ago
Paul Brennan
▴ 10
0
votes
2
replies
924
views
BiocCheck package size
BiocCheck
updated 5.1 years ago by
Hervé Pagès
16k • written 5.1 years ago by
zhang.jianhai
▴ 10
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.9 years ago
waterincan
• 0
0
votes
1
reply
859
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
zhezhenwang
• 0
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
0
votes
2
replies
935
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.0 years ago
ullrich
▴ 20
18 results • Page
1 of 1
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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