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coexpression
•
reset
0
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0
replies
1.2k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.7 years ago
Hanna
▴ 10
15
votes
17
replies
31k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 5.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.2 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
2.4k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 6.2 years ago by
Gordon Smyth
53k • written 6.2 years ago by
bioming
▴ 10
5
votes
3
replies
3.2k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 6.5 years ago by
Peter Langfelder
★ 3.0k • written 6.5 years ago by
mikhael.manurung
▴ 280
3
votes
7
replies
3.4k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 7.6 years ago by
Peter Langfelder
★ 3.0k • written 7.6 years ago by
7kemZmani
▴ 10
0
votes
0
replies
1.2k
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
7.6 years ago
tarun2
• 0
0
votes
1
reply
1.6k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.7 years ago by
Peter Langfelder
★ 3.0k • written 7.7 years ago by
hkarakurt
▴ 20
0
votes
0
replies
2.3k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
7.7 years ago
jol.espinoz
▴ 40
0
votes
0
replies
1.0k
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
7.7 years ago
edoardobertolini
• 0
2
votes
1
reply
2.0k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 7.8 years ago by
Peter Langfelder
★ 3.0k • written 7.8 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.8k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 8.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.1 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
2.4k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
juls
• 0
1
vote
0
replies
1.8k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
9.6 years ago
m.fletcher
▴ 20
3
votes
2
replies
3.1k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.6 years ago by
Peter Langfelder
★ 3.0k • written 9.6 years ago by
Alan Smith
▴ 150
2
votes
7
replies
5.7k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.8 years ago by
Peter Langfelder
★ 3.0k • written 9.8 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
3.2k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 10.0 years ago by
Peter Langfelder
★ 3.0k • written 10.0 years ago by
michael.ridley6
• 0
13
votes
1
reply
5.9k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 10.3 years ago by
Peter Langfelder
★ 3.0k • written 10.3 years ago by
abellonau
▴ 60
4
votes
5
replies
7.4k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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