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coexpression
•
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0
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0
replies
1.3k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.9 years ago
Hanna
▴ 10
15
votes
17
replies
32k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 5.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.4 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
2.6k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 6.4 years ago by
Gordon Smyth
53k • written 6.4 years ago by
bioming
▴ 10
5
votes
3
replies
3.3k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 6.7 years ago by
Peter Langfelder
★ 3.0k • written 6.7 years ago by
mikhael.manurung
▴ 280
3
votes
7
replies
3.7k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 7.8 years ago by
Peter Langfelder
★ 3.0k • written 7.8 years ago by
7kemZmani
▴ 10
0
votes
0
replies
1.2k
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
7.9 years ago
tarun2
• 0
0
votes
1
reply
1.7k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
hkarakurt
▴ 20
0
votes
0
replies
2.4k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
7.9 years ago
jol.espinoz
▴ 40
0
votes
0
replies
1.1k
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
8.0 years ago
edoardobertolini
• 0
2
votes
1
reply
2.2k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 8.0 years ago by
Peter Langfelder
★ 3.0k • written 8.0 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.9k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 8.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.4 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
2.6k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
juls
• 0
1
vote
0
replies
1.9k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
9.8 years ago
m.fletcher
▴ 20
3
votes
2
replies
3.2k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.9 years ago by
Peter Langfelder
★ 3.0k • written 9.9 years ago by
Alan Smith
▴ 150
2
votes
7
replies
5.9k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 10.0 years ago by
Peter Langfelder
★ 3.0k • written 10.0 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
3.3k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 10.2 years ago by
Peter Langfelder
★ 3.0k • written 10.2 years ago by
michael.ridley6
• 0
13
votes
1
reply
6.5k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 10.5 years ago by
Peter Langfelder
★ 3.0k • written 10.5 years ago by
abellonau
▴ 60
4
votes
5
replies
7.5k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
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Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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