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coexpression
•
reset
0
votes
0
replies
1.3k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.9 years ago
Hanna
▴ 10
15
votes
17
replies
31k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 5.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.3 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
2.5k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 6.4 years ago by
Gordon Smyth
53k • written 6.4 years ago by
bioming
▴ 10
5
votes
3
replies
3.3k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 6.7 years ago by
Peter Langfelder
★ 3.0k • written 6.7 years ago by
mikhael.manurung
▴ 280
3
votes
7
replies
3.5k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 7.7 years ago by
Peter Langfelder
★ 3.0k • written 7.8 years ago by
7kemZmani
▴ 10
0
votes
0
replies
1.2k
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
7.8 years ago
tarun2
• 0
0
votes
1
reply
1.6k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
hkarakurt
▴ 20
0
votes
0
replies
2.4k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
7.9 years ago
jol.espinoz
▴ 40
0
votes
0
replies
1.0k
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
7.9 years ago
edoardobertolini
• 0
2
votes
1
reply
2.1k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.9k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 8.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.3 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
2.5k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
juls
• 0
1
vote
0
replies
1.9k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
9.7 years ago
m.fletcher
▴ 20
3
votes
2
replies
3.2k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.8 years ago by
Peter Langfelder
★ 3.0k • written 9.8 years ago by
Alan Smith
▴ 150
2
votes
7
replies
5.8k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.9 years ago by
Peter Langfelder
★ 3.0k • written 9.9 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
3.3k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 10.1 years ago by
Peter Langfelder
★ 3.0k • written 10.1 years ago by
michael.ridley6
• 0
13
votes
1
reply
6.1k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 10.5 years ago by
Peter Langfelder
★ 3.0k • written 10.5 years ago by
abellonau
▴ 60
4
votes
5
replies
7.5k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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Frances Turner
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maltethodberg
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Popular Question
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mohammedtoufiq91
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Lluís Revilla Sancho
▴ 760
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