Bioconductor Coexpression

Showing : coexpression • reset

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1.3k

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coexpression WGCNA

4.9 years ago Hanna ▴ 10

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32k

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wgcna network analysis network correlation coexpression

updated 5.2 years ago by Lluís Revilla Sancho ▴ 760 • written 9.4 years ago by jol.espinoz ▴ 40

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2.6k

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wgcna network coexpression eigengenes

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by bioming ▴ 10

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3.3k

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wgcna coexpression sva

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by mikhael.manurung ▴ 280

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3.7k

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rna-seq WGCNA deseq method coexpression

updated 7.8 years ago by Peter Langfelder ★ 3.0k • written 7.8 years ago by 7kemZmani ▴ 10

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1.2k

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wgcna module mergecutheight coexpression

7.8 years ago tarun2 • 0

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1.7k

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differential analysis differential gene expression coexpression correlation

updated 7.9 years ago by Peter Langfelder ★ 3.0k • written 7.9 years ago by hkarakurt ▴ 20

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2.4k

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wgcna modules coexpression networks

7.9 years ago jol.espinoz ▴ 40

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1.1k

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coexpression linc LINC package

7.9 years ago edoardobertolini • 0

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2.1k

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wgcna coexpression transcriptome

updated 8.0 years ago by Peter Langfelder ★ 3.0k • written 8.0 years ago by jol.espinoz ▴ 40

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1.9k

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wgcna coexpression cooccurrence coabundance network

updated 8.3 years ago by Lluís Revilla Sancho ▴ 760 • written 8.3 years ago by jol.espinoz ▴ 40

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2.6k

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microarray pearsoncorrelation coexpression spearman

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by juls • 0

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1.9k

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gsea ncrna coexpression gene set analysis gene set testing

9.8 years ago m.fletcher ▴ 20

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3.2k

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wgcna rbgl graph coexpression hub genes

updated 9.9 years ago by Peter Langfelder ★ 3.0k • written 9.9 years ago by Alan Smith ▴ 150

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5.8k

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wgcna coexpression correlation microarray

updated 10.0 years ago by Peter Langfelder ★ 3.0k • written 10.0 years ago by shalinisonar13 ▴ 20

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3.3k

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WGCNA coexpression microarray

updated 10.2 years ago by Peter Langfelder ★ 3.0k • written 10.2 years ago by michael.ridley6 • 0

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6.4k

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WGCNA coexpression

updated 10.5 years ago by Peter Langfelder ★ 3.0k • written 10.5 years ago by abellonau ▴ 60

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7.5k

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wgcna coexpression

updated 10.6 years ago by Dan Tenenbaum ★ 8.2k • written 10.6 years ago by ctruongctruong ▴ 10

18 results • Page 1 of 1

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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