Showing : convert • reset
6
votes
1
reply
3.1k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.4 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
5
votes
5
replies
2.0k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
9.7 years ago patrick.schordert ▴ 30
3
votes
1
reply
13k
views
convert data in to expression set
limma convert limma convert
updated 10.9 years ago by ▴ 180 • written 10.9 years ago by ▴ 80
3
votes
1
reply
3.3k
views
convert GeneSetCollection to a list
convert convert
updated 12.5 years ago by ★ 3.3k • written 12.5 years ago by ▴ 360
2
votes
2
replies
2.1k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 260
2
votes
6
replies
1.6k
views
getLDS error in scan
biomaRt getLDS convert gene symbols
updated 3.6 years ago by ★ 6.5k • written 3.6 years ago by • 0
2
votes
1
reply
1.1k
views
handling 12 bit tiffs in EBImage
convert EBImage convert EBImage
updated 13.9 years ago by ▴ 310 • written 13.9 years ago by ▴ 120
2
votes
5
replies
846
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago j_denton • 0
2
votes
1
reply
716
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData DataImport oligo RNASeqData convert
updated 10 months ago by 65k • written 10 months ago by • 0
1
vote
3
replies
2.3k
views
Converting to official gene symbols
convert convert
updated 15.9 years ago by ▴ 20 • written 15.9 years ago by ▴ 90
1
vote
2
replies
2.2k
views
Apply non-Gaussian distribution data to limma
limma convert limma convert
updated 10.4 years ago by 65k • written 10.4 years ago by ★ 13k
1
vote
2
replies
3.4k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.3 years ago by ▴ 30 • written 10.0 years ago by ★ 4.0k
1
vote
4
replies
1.4k
views
RNA-seq analysis using R
limma rnaseq convert R
updated 13 months ago by 50k • written 5.5 years ago by ▴ 10
1
vote
7
replies
2.3k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
1
vote
3
replies
476
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 6 months ago by 65k • written 6 months ago by • 0
1
vote
2
replies
12k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.1k
1
vote
1
reply
2.1k
views
RleList
convert IRanges convert IRanges
updated 10.4 years ago by ★ 11k • written 10.4 years ago by ▴ 20
1
vote
1
reply
1.7k
views
Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
1
vote
1
reply
1.5k
views
converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
7.9 years ago arvind90.psc • 0
1
vote
2
replies
6.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.4 years ago by • 0
1
vote
1
reply
2.7k
views
MethyLumiSet object
convert genoset minfi convert genoset minfi
11.1 years ago Tim Triche ★ 4.2k
1
vote
2
replies
3.1k
views
GenBank RefSeq conversion
convert convert
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 150
1
vote
1
reply
1.2k
views
Rsubread for paired end SOLID sequencing
Sequencing Alignment convert Rsubread Sequencing Alignment convert Rsubread
updated 10.7 years ago by ★ 3.6k • written 10.7 years ago by ▴ 50
1
vote
2
replies
2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.2 years ago by 50k • written 8.2 years ago by • 0
1
vote
3
replies
1.4k
views
To convert MAList to ExpressionSet using R package 'convert'
convert
updated 7.5 years ago by 50k • written 7.5 years ago by • 0
0
votes
0
replies
778
views
GenMAPP swissprot question / answers
probe convert probe convert
20.6 years ago Phguardiol@aol.com ▴ 720
0
votes
0
replies
731
views
Re: Bioconductor Digest, Vol 6, Issue
gcrma convert gcrma convert
20.8 years ago Leslie Cope ▴ 50
0
votes
0
replies
705
views
Re: how to convert expression set data into matrix data ?
convert convert
20.8 years ago Sylvia Merk ▴ 50
0
votes
1
reply
2.8k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 16 months ago by 50k • written 12.0 years ago by ★ 6.5k
0
votes
0
replies
642
views
Re: time serie data
convert convert
20.6 years ago Nicholas Lewin-Koh ▴ 430
0
votes
3
replies
1.4k
views
How to convert Illumina ProbeIDs to nuIDs without nuID indexed annotation libraries?
Annotation GO convert lumi Annotation GO convert lumi
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ▴ 150
0
votes
2
replies
2.3k
views
how to convert expression set data into matrix data ?
convert convert
updated 20.8 years ago by ▴ 920 • written 20.8 years ago by ▴ 10
0
votes
2
replies
856
views
multtest question
convert convert
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 720
0
votes
0
replies
750
views
Genomicfeatures chromosome names matching
Cancer TranscriptDb convert Cancer TranscriptDb convert
12.3 years ago Hervé Pagès 16k
0
votes
0
replies
674
views
Questions on getting information from affy's CEL, CDF
Cancer cdf convert Cancer cdf convert
21.2 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
1.6k
views
Importing data into Bioconductor
convert convert
21.3 years ago Fernando Henrique Ferraz P da Rosa ▴ 20
0
votes
2
replies
1.1k
views
question subsetting expressionSet
GO convert GO convert
updated 12.4 years ago by ▴ 550 • written 12.4 years ago by ★ 4.0k
0
votes
1
reply
1.5k
views
arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 15.7 years ago by ▴ 680 • written 15.7 years ago by 25k
0
votes
2
replies
1.7k
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
17.7 years ago James W. MacDonald 65k
0
votes
3
replies
1.2k
views
Affy : checkSlotAssignment() Error
cdf convert cdf convert
21.5 years ago Sundaram, Shyam NIH/CIT ▴ 110
0
votes
1
reply
820
views
RE: venn diagram
convert convert
updated 20.1 years ago by ▴ 620 • written 20.1 years ago by ▴ 20
0
votes
1
reply
892
views
reading in a text file
convert convert
updated 20.2 years ago by ▴ 60 • written 20.2 years ago by ▴ 30
0
votes
0
replies
2.2k
views
Pathview question
Network convert pathview Network convert pathview
10.1 years ago Luo Weijun ★ 1.6k
0
votes
5
replies
3.1k
views
fastq files
convert convert
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 860
0
votes
0
replies
1.1k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
20.0 years ago James Wettenhall ▴ 1000
0
votes
3
replies
1.8k
views
qvalues, sam, limma
affy limma convert affy limma convert
20.0 years ago • updated 19.9 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
1.0k
views
Agilent microarray
Microarray Normalization convert Microarray Normalization convert
19.8 years ago s-uchida ▴ 20
0
votes
0
replies
1.1k
views
Re: [R] How to convert a vector into a list
convert convert
19.8 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
672
views
Annotate Package: How do I get the gene names and how do I write my matrix
Microarray Annotation Cancer annaffy convert Microarray Annotation Cancer annaffy convert
19.8 years ago James W. MacDonald 65k
0
votes
1
reply
746
views
installing affy devel package
GO affy convert GO affy convert
20.2 years ago Ben Bolstad ★ 1.1k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
The city by the bay, 26 minutes ago
Poland, 52 minutes ago
Melbourne, Australia, 1 hour ago
Ireland, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 510 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6